RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 TAP2Q03519 686 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 SLC10A1Q14973 349 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 ARHGAP19Q14CB8 494 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 ZNF750Q32MQ0 723 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 TSTD2Q5T7W7 516 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 MEI1Q5TIA1 1274 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 GK5Q6ZS86 529 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 ULK2Q8IYT8 1036 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 RCOR2Q8IZ40 523 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 CAMKVQ8NCB2 501 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 ZNF480Q8WV37 535 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 PIGTQ969N2 578 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 TM4SF19Q96DZ7 209 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 DOCK7Q96N67 2140 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 SECISBP2Q96T21 854 aaKnown RBP13.47□□□□□ -0.25
CLN3-249ENST00000636685 P2RY12Q9H244 342 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 GOLPH3Q9H4A6 298 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 IL1RL2Q9HB29 575 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 CAPN11Q9UMQ6 739 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 TRGV5A0A0B4J1U4 118 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 HAX1O00165 279 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 CLDN4O14493 209 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 KPNA5O15131 536 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 CHST10O43529 356 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 SLC16A8O95907 504 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 B3GALT4O96024 378 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 IFNA2P01563 188 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 JAK1P23458 1154 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 COILP38432 576 aaPredicted RBP13.46□□□□□ -0.25
CLN3-249ENST00000636685 AGFG1P52594 562 aaKnown RBP13.46□□□□□ -0.25
CLN3-249ENST00000636685 SORDQ00796 357 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 XKR6Q5GH73 641 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 THEMIS2Q5TEJ8 643 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 SLC26A11Q86WA9 606 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 RHOT2Q8IXI1 618 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 KATNAL2Q8IYT4 538 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 B3GNT7Q8NFL0 401 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 OR52K1Q8NGK4 314 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 SREK1Q8WXA9 508 aaKnown RBP13.46□□□□□ -0.25
CLN3-249ENST00000636685 ASB15Q8WXK1 588 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 FAM136AQ96C01 138 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 MRFAP1L1Q96HT8 127 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 FAM173AQ9BQD7 235 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 EPB41L4BQ9H329 900 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 SEMA4BQ9NPR2 832 aaPredicted RBP13.46□□□□□ -0.25
CLN3-249ENST00000636685 NECTIN3Q9NQS3 549 aa13.46□□□□□ -0.25
CLN3-249ENST00000636685 ZNF629Q9UEG4 869 aaPredicted RBP13.46□□□□□ -0.25
CLN3-249ENST00000636685 YARS2Q9Y2Z4 477 aaKnown RBP13.46□□□□□ -0.25
CLN3-249ENST00000636685 USF3Q68DE3 2245 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 NINQ8N4C6 2090 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 TCRBV16S1A1N1A0A5B0 115 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 OR2J2O76002 312 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 CNR1P21554 472 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 SOX3P41225 446 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 DNASE1L1P49184 302 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 ZNF136P52737 540 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 MEF2AQ02078 507 aaPredicted RBP13.45□□□□□ -0.26
CLN3-249ENST00000636685 FOXO1Q12778 655 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 PARP6Q2NL67 630 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 ASTE1Q2TB18 679 aaPredicted RBP13.45□□□□□ -0.26
CLN3-249ENST00000636685 QSOX2Q6ZRP7 698 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 MAATS1Q7Z4T9 603 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 ASPGQ86U10 573 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 LRRC56Q8IYG6 542 aaPredicted RBP13.45□□□□□ -0.26
CLN3-249ENST00000636685 FBXO15Q8NCQ5 510 aaPredicted RBP13.45□□□□□ -0.26
CLN3-249ENST00000636685 SLC13A3Q8WWT9 602 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 SMPDL3BQ92485 455 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 CATSPERZQ9NTU4 200 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 TMEM184CQ9NVA4 438 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 TUBA8Q9NY65 449 aaPredicted RBP13.45□□□□□ -0.26
CLN3-249ENST00000636685 SLC22A7Q9Y694 548 aa13.45□□□□□ -0.26
CLN3-249ENST00000636685 ROS1P08922 2347 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.44□□□□□ -0.26
CLN3-249ENST00000636685 IGKV3D-11A0A0A0MRZ8 115 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 ZNF839A8K0R7 811 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 EEF1E1-BLOC1S5C9J1V9 151 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 PHF1O43189 567 aaPredicted RBP13.44□□□□□ -0.26
CLN3-249ENST00000636685 EEF1E1O43324 174 aaKnown RBP13.44□□□□□ -0.26
CLN3-249ENST00000636685 LCMT2O60294 686 aaKnown RBP13.44□□□□□ -0.26
CLN3-249ENST00000636685 HCN1O60741 890 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 PSIP1O75475 530 aaKnown RBP13.44□□□□□ -0.26
CLN3-249ENST00000636685 MYO1DO94832 1006 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 HSD17B2P37059 387 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 EIF3BP55884 814 aaKnown RBP13.44□□□□□ -0.26
CLN3-249ENST00000636685 PRAMEP78395 509 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 ACVR1Q04771 509 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 TRIM14Q14142 442 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 GBX1Q14549 363 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 AARS2Q5JTZ9 985 aaKnown RBP13.44□□□□□ -0.26
CLN3-249ENST00000636685 CTSL3PQ5NE16 218 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 GPALPP1Q8IXQ4 340 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 FBXW8Q8N3Y1 598 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 AFAP1L2Q8N4X5 818 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 NCLNQ969V3 563 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 THAP11Q96EK4 314 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 DACH2Q96NX9 599 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 CCL19Q99731 98 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 FAM114A2Q9NRY5 505 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 ANAPC5Q9UJX4 755 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms