RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 E2F2Q14209 437 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 DEFB134Q4QY38 66 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 ADNP2Q6IQ32 1131 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 NIPAL1Q6NVV3 410 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 COX15Q7KZN9 410 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 OVCH1Q7RTY7 1134 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 SYVN1Q86TM6 617 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 LAS2Q8IYD9 372 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 L3MBTL4Q8NA19 623 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 OR7G3Q8NG95 312 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 SREK1Q8WXA9 508 aaKnown RBP17.15■□□□□ 0.34
CLN3-239ENST00000628023 FAR2Q96K12 515 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 NTMT1Q9BV86 223 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 SLC6A16Q9GZN6 736 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 REXO4Q9GZR2 422 aaKnown RBP17.15■□□□□ 0.34
CLN3-239ENST00000628023 RHBGQ9H310 441 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 SLC22A11Q9NSA0 550 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 SLC17A7Q9P2U7 560 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 CTSFQ9UBX1 484 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 ZNF282Q9UDV7 671 aaPredicted RBP17.15■□□□□ 0.34
CLN3-239ENST00000628023 ADGRE2Q9UHX3 823 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 TCFL5Q9UL49 500 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 NAALAD2Q9Y3Q0 740 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 ZNF860A6NHJ4 632 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 H0YIG0 161 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 H0YIV9 168 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 ERI3O43414 337 aaKnown RBP17.14■□□□□ 0.33
CLN3-239ENST00000628023 RDH16O75452 317 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 MLYCDO95822 493 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 ALBP02768 609 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 NAGLUP54802 743 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 DNAJB13P59910 316 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 RAB8AP61006 207 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 NAA20P61599 178 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 MAT1AQ00266 395 aaKnown RBP17.14■□□□□ 0.33
CLN3-239ENST00000628023 CDC20Q12834 499 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 LCP2Q13094 533 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 IFT88Q13099 833 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 ERV3-1Q14264 604 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 PCLAFQ15004 111 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 ZRSR2Q15696 482 aaKnown RBP17.14■□□□□ 0.33
CLN3-239ENST00000628023 FAM69BQ5VUD6 431 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 LIPMQ5VYY2 423 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 TRIM40Q6P9F5 258 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 HDXQ7Z353 690 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 VN1R5Q7Z5H4 357 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 EXOC3L1Q86VI1 746 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 C10orf107Q8IVU9 208 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 OR4F6Q8NGB9 312 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 UTP15Q8TED0 518 aaKnown RBP17.14■□□□□ 0.33
CLN3-239ENST00000628023 GAL3ST3Q96A11 431 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 ZNF382Q96SR6 550 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 KLHL31Q9H511 634 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 KCNK9Q9NPC2 374 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 OXSMQ9NWU1 459 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 HCN3Q9P1Z3 774 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 NXT1Q9UKK6 140 aaKnown RBP17.14■□□□□ 0.33
CLN3-239ENST00000628023 MAP4K5Q9Y4K4 846 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 ACTL7BQ9Y614 415 aa17.14■□□□□ 0.33
CLN3-239ENST00000628023 A0A088AWK7 358 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 CDC14CA4D256 554 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 LRIT2A6NDA9 550 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 FFAR3O14843 346 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 NKX2-8O15522 239 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 GPR42O15529 346 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 TYROBPO43914 113 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 SH3BGRLO75368 114 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 ONECUT2O95948 504 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 ZNF10P21506 573 aaPredicted RBP17.13■□□□□ 0.33
CLN3-239ENST00000628023 HNRNPH1P31943 449 aaKnown RBP17.13■□□□□ 0.33
CLN3-239ENST00000628023 PIK3CBP42338 1070 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 SNRPNP63162 240 aaKnown RBP17.13■□□□□ 0.33
CLN3-239ENST00000628023 HYAL2Q12891 473 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 NKG7Q16617 165 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 GGTA1PQ4G0N0 100 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 MRPL14Q6P1L8 145 aaKnown RBP17.13■□□□□ 0.33
CLN3-239ENST00000628023 LETMD1Q6P1Q0 360 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 SHISA6Q6ZSJ9 500 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 GPRIN3Q6ZVF9 776 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 PRSS58Q8IYP2 241 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 GOLGA6L1Q8N7Z2 621 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 HUS1BQ8NHY5 278 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 ZNF473Q8WTR7 871 aaKnown RBP17.13■□□□□ 0.33
CLN3-239ENST00000628023 APOBEC4Q8WW27 367 aaKnown RBP17.13■□□□□ 0.33
CLN3-239ENST00000628023 MIEF2Q96C03 454 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 CMTM7Q96FZ5 175 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 MTERF1Q99551 399 aaKnown RBP17.13■□□□□ 0.33
CLN3-239ENST00000628023 CENPKQ9BS16 269 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 GSTO2Q9H4Y5 243 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 ELOVL6Q9H5J4 265 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 SOX17Q9H6I2 414 aaPredicted RBP17.13■□□□□ 0.33
CLN3-239ENST00000628023 WDR54Q9H977 334 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 COPS7BQ9H9Q2 264 aaPredicted RBP17.13■□□□□ 0.33
CLN3-239ENST00000628023 SSU72Q9NP77 194 aaKnown RBP17.13■□□□□ 0.33
CLN3-239ENST00000628023 MKKSQ9NPJ1 570 aaPredicted RBP17.13■□□□□ 0.33
CLN3-239ENST00000628023 DMRT3Q9NQL9 472 aa17.13■□□□□ 0.33
CLN3-239ENST00000628023 A0A0G2JN53 185 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 PPP6CO00743 305 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 GALR3O60755 368 aaPredicted RBP17.12■□□□□ 0.33
CLN3-239ENST00000628023 TRIM13O60858 407 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms