RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CDC20Q12834 499 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 VWA2Q5GFL6 755 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 ATP1A1-AS1Q5TC04 95 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 LIPMQ5VYY2 423 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 LETMD1Q6P1Q0 360 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 C10orf107Q8IVU9 208 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 WDR20Q8TBZ3 569 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 STT3BQ8TCJ2 826 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 GAL3ST3Q96A11 431 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 ZNF382Q96SR6 550 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 MTERF1Q99551 399 aaKnown RBP15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 MS4A8Q9BY19 250 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 REXO4Q9GZR2 422 aaKnown RBP15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 ITPR1Q14643 2758 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 ZNF860A6NHJ4 632 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 ERI3O43414 337 aaKnown RBP15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 UMODP07911 640 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 FOLR3P41439 243 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 NAA20P61599 178 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 SKP1P63208 163 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 LCP2Q13094 533 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 DDX39BQ13838 428 aaKnown RBP15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 UGT8Q16880 541 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 NIPAL1Q6NVV3 410 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 GPR155Q7Z3F1 870 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 SHISA5Q8N114 240 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 RNF175Q8N4F7 328 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 OR2L5Q8NG80 312 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 ADAMTS17Q8TE56 1095 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 MAGEB10Q96LZ2 347 aaPredicted RBP15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 F2RL3Q96RI0 385 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 YIPF2Q9BWQ6 316 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 TGIF2Q9GZN2 237 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 STMN4Q9H169 189 aaPredicted RBP15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 TMBIM4Q9HC24 238 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 MKKSQ9NPJ1 570 aaPredicted RBP15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 DMRT3Q9NQL9 472 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 TRPS1Q9UHF7 1281 aa15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 NXT1Q9UKK6 140 aaKnown RBP15.67■□□□□ 0.1
CCDC28A-202ENST00000611852 CDC14CA4D256 554 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 AGPSO00116 658 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 OR4F21O95013 312 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 TGFB1P01137 390 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 ZGLP1P0C6A0 271 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 ALDH3A1P30838 453 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 ETV4P43268 484 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 NEK2P51955 445 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 FRG2Q64ET8 278 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 SHISA6Q6ZSJ9 500 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 FRMD7Q6ZUT3 714 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 OR5T3Q8NGG3 340 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 OR51Q1Q8NH59 317 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 MIEF2Q96C03 454 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 CMTM7Q96FZ5 175 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 FRG2BQ96QU4 278 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 SOX17Q9H6I2 414 aaPredicted RBP15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 ZNF446Q9NWS9 450 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 HCN3Q9P1Z3 774 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 STK38LQ9Y2H1 464 aa15.66■□□□□ 0.1
CCDC28A-202ENST00000611852 A0A0G2JN53 185 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 GOLGA6L10A6NI86 522 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 MAGEB17A8MXT2 336 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 FOXE1O00358 373 aaPredicted RBP15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 UBFD1O14562 309 aaKnown RBP15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 ATP8B1O43520 1251 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 TRIM13O60858 407 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 DNAJB6O75190 326 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 SH3BGRLO75368 114 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 PLA2G16P53816 162 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 BTN3A2P78410 334 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 PHEXP78562 749 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 KLC1Q07866 573 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 SSPNQ14714 243 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 TMEM35AQ53FP2 167 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 CFAP157Q5JU67 520 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 C10orf62Q5T681 223 aaPredicted RBP15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 DEPDC1Q5TB30 811 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 KHDRBS2Q5VWX1 349 aaKnown RBP15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 FAM219BQ5XKK7 198 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 TTC19Q6DKK2 380 aaPredicted RBP15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 TRIM40Q6P9F5 258 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 ABHD17CQ6PCB6 329 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 GPRIN3Q6ZVF9 776 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 CHSY3Q70JA7 882 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 HDXQ7Z353 690 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 UBE3DQ7Z6J8 389 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 LAPTM4BQ86VI4 370 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 ZC3H7AQ8IWR0 971 aaKnown RBP15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 PRSS58Q8IYP2 241 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 FAR2Q96K12 515 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 MECRQ9BV79 373 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 OR51B5Q9H339 312 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 PRM3Q9NNZ6 103 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 C14orf105Q9NVL8 296 aa15.65■□□□□ 0.1
CCDC28A-202ENST00000611852 BMP10O95393 424 aa15.64■□□□□ 0.09
CCDC28A-202ENST00000611852 ESRRBO95718 433 aa15.64■□□□□ 0.09
CCDC28A-202ENST00000611852 CCR10P46092 362 aa15.64■□□□□ 0.09
CCDC28A-202ENST00000611852 XCR1P46094 333 aa15.64■□□□□ 0.09
CCDC28A-202ENST00000611852 PKNOX1P55347 436 aa15.64■□□□□ 0.09
CCDC28A-202ENST00000611852 RPS13P62277 151 aaKnown RBP15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms