RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CDC25BP30305 580 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 DNAJA1P31689 397 aaKnown RBP5.89□□□□□ -1.47
CUX1-220ENST00000607092 AHRP35869 848 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 GRIA1P42261 906 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 MEOX1P50221 254 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 SSR4P51571 173 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 CLCN7P51798 805 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 ITGA8P53708 1063 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 AP1S2P56377 157 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 KRTAP10-9P60411 292 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 TBPL1P62380 186 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 BASP1P80723 227 aaKnown RBP5.89□□□□□ -1.47
CUX1-220ENST00000607092 LINC01559Q495D7 138 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 OXLD1Q5BKU9 147 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 ACSBG2Q5FVE4 666 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 ZNF470Q6ECI4 717 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 AADACL2Q6P093 401 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 CASC4Q6P4E1 433 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 AGTRAPQ6RW13 159 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 LCTLQ6UWM7 567 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 B3GNT6Q6ZMB0 384 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 UBE2R2Q712K3 238 aaPredicted RBP5.89□□□□□ -1.47
CUX1-220ENST00000607092 VN1R4Q7Z5H5 301 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 CD163Q86VB7 1156 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 SLC26A11Q86WA9 606 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 SLC13A5Q86YT5 568 aaPredicted RBP5.89□□□□□ -1.47
CUX1-220ENST00000607092 CILP2Q8IUL8 1156 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 CYP4X1Q8N118 509 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 MYO1HQ8N1T3 1032 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 AFAP1L2Q8N4X5 818 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 CPSF7Q8N684 471 aaKnown RBP5.89□□□□□ -1.47
CUX1-220ENST00000607092 MFSD9Q8NBP5 474 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 B3GNT7Q8NFL0 401 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 ABHD11Q8NFV4 315 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 GOT1L1Q8NHS2 421 aaPredicted RBP5.89□□□□□ -1.47
CUX1-220ENST00000607092 ATG4AQ8WYN0 398 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 RMND5BQ96G75 393 aaPredicted RBP5.89□□□□□ -1.47
CUX1-220ENST00000607092 VMP1Q96GC9 406 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 PEX11GQ96HA9 241 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 SEC16BQ96JE7 1060 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 PTCHD1Q96NR3 888 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 ALPK1Q96QP1 1244 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 FAM167BQ9BTA0 163 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 HES7Q9BYE0 225 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 PARVBQ9HBI1 364 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 XAB2Q9HCS7 855 aaKnown RBP5.89□□□□□ -1.47
CUX1-220ENST00000607092 ABCF3Q9NUQ8 709 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 DNAJB12Q9NXW2 375 aaKnown RBP5.89□□□□□ -1.47
CUX1-220ENST00000607092 TRMT6Q9UJA5 497 aaKnown RBP5.89□□□□□ -1.47
CUX1-220ENST00000607092 FOXD3Q9UJU5 478 aaPredicted RBP5.89□□□□□ -1.47
CUX1-220ENST00000607092 ERVK-11Q9UQG0 969 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 RNF6Q9Y252 685 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 CRYL1Q9Y2S2 319 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 YARS2Q9Y2Z4 477 aaKnown RBP5.89□□□□□ -1.47
CUX1-220ENST00000607092 DHRS7Q9Y394 339 aa5.89□□□□□ -1.47
CUX1-220ENST00000607092 HIVEP2P31629 2446 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 TCRBV16S1A1N1A0A5B0 115 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 TRBC2A0A5B9 178 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 SDR42E2A6NKP2 422 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 FAM90A27PA6NNH2 459 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 A8MVJ9 347 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 NDUFS4O43181 175 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 CHST10O43529 356 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 HS6ST1O60243 411 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 KLK8O60259 260 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 CEP104O60308 925 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 CDC40O60508 579 aaKnown RBP eCLIP5.88□□□□□ -1.47
CUX1-220ENST00000607092 GALR3O60755 368 aaPredicted RBP5.88□□□□□ -1.47
CUX1-220ENST00000607092 ZFAND5O76080 213 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 TOXO94900 526 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 GABRA1P14867 456 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 ACVR2AP27037 513 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 NMBRP28336 390 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 PTGER1P34995 402 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 RPL22P35268 128 aaKnown RBP5.88□□□□□ -1.47
CUX1-220ENST00000607092 ZFP36L2P47974 494 aaKnown RBP5.88□□□□□ -1.47
CUX1-220ENST00000607092 HSD17B7P56937 341 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 STXBP1P61764 594 aaKnown RBP5.88□□□□□ -1.47
CUX1-220ENST00000607092 YBX1P67809 324 aaKnown RBP5.88□□□□□ -1.47
CUX1-220ENST00000607092 PLGLB1Q02325 96 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 ILF2Q12905 390 aaKnown RBP5.88□□□□□ -1.47
CUX1-220ENST00000607092 CSHL1Q14406 222 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 KCNJ11Q14654 390 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 CMPK2Q5EBM0 449 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 DUPD1Q68J44 220 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 C3P1Q6ZMU1 363 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 PLD3Q8IV08 490 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 SULF2Q8IWU5 870 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 CHERPQ8IWX8 916 aaKnown RBP5.88□□□□□ -1.47
CUX1-220ENST00000607092 LRRC56Q8IYG6 542 aaPredicted RBP5.88□□□□□ -1.47
CUX1-220ENST00000607092 TMEM132CQ8N3T6 1108 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 PPFIBP2Q8ND30 876 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 TTLQ8NG68 377 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 OR5L2Q8NGL0 311 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 OR10Q1Q8NGQ4 319 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 ZCCHC10Q8TBK6 192 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 NT5CQ8TCD5 201 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 ANKRD7Q92527 254 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 DAZLQ92904 295 aaKnown RBP5.88□□□□□ -1.47
CUX1-220ENST00000607092 SARAFQ96BY9 339 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms