RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 IGSF10Q6WRI0 2623 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 EIF4E1BA6NMX2 242 aaKnown RBP14.37□□□□□ -0.11
LIG1-219ENST00000600055 AGPSO00116 658 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 PPP6CO00743 305 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 TGFB1P01137 390 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 IGHEP01854 428 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 TAC1P20366 129 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 GSTM2P28161 218 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 PIK3CGP48736 1102 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 PLA2G16P53816 162 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 CDH13P55290 713 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 RAPSNQ13702 412 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 DDX39BQ13838 428 aaKnown RBP14.37□□□□□ -0.11
LIG1-219ENST00000600055 CPSF6Q16630 551 aaKnown RBP eCLIP14.37□□□□□ -0.11
LIG1-219ENST00000600055 ADPRMQ3LIE5 342 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 DCAF10Q5QP82 559 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 MFSD4BQ5TF39 518 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 LIPJQ5W064 366 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 METTL2BQ6P1Q9 378 aaKnown RBP14.37□□□□□ -0.11
LIG1-219ENST00000600055 MREGQ8N565 214 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 AMER2Q8N7J2 671 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 TMEM102Q8N9M5 508 aaPredicted RBP14.37□□□□□ -0.11
LIG1-219ENST00000600055 ZNF483Q8TF39 744 aaPredicted RBP14.37□□□□□ -0.11
LIG1-219ENST00000600055 UBE2E3Q969T4 207 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 ATP6V1E2Q96A05 226 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 GAL3ST3Q96A11 431 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 SEC16BQ96JE7 1060 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 MS4A8Q9BY19 250 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 VN1R1Q9GZP7 353 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 REXO4Q9GZR2 422 aaKnown RBP14.37□□□□□ -0.11
LIG1-219ENST00000600055 SEMA4BQ9NPR2 832 aaPredicted RBP14.37□□□□□ -0.11
LIG1-219ENST00000600055 SCN3AQ9NY46 2000 aa14.37□□□□□ -0.11
LIG1-219ENST00000600055 A0A1B0GTL3 188 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 GLRA3O75311 464 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 CDC123O75794 336 aaPredicted RBP14.36□□□□□ -0.11
LIG1-219ENST00000600055 PDGFAP04085 211 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 KRT4P19013 534 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 ATP5F1P24539 256 aaPredicted RBP14.36□□□□□ -0.11
LIG1-219ENST00000600055 ARL1P40616 181 aaPredicted RBP14.36□□□□□ -0.11
LIG1-219ENST00000600055 CCNG1P51959 295 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 RRADP55042 308 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 EEF1A2Q05639 463 aaKnown RBP14.36□□□□□ -0.11
LIG1-219ENST00000600055 SLC18A2Q05940 514 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 TRAF3Q13114 568 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 RUNX2Q13950 521 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 MINDY4Q4G0A6 757 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 UNC50Q53HI1 259 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 ABHD17CQ6PCB6 329 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 UBE3DQ7Z6J8 389 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 CNPY4Q8N129 248 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 CA13Q8N1Q1 262 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 L3MBTL4Q8NA19 623 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 OR2L5Q8NG80 312 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 OR11G2Q8NGC1 345 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 HUS1BQ8NHY5 278 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 C9orf43Q8TAL5 461 aaPredicted RBP14.36□□□□□ -0.11
LIG1-219ENST00000600055 ZBTB9Q96C00 473 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 FAR2Q96K12 515 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 FER1L6-AS2Q96M78 137 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 QRFPRQ96P65 431 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 TMEM237Q96Q45 408 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 MTERF1Q99551 399 aaKnown RBP14.36□□□□□ -0.11
LIG1-219ENST00000600055 SLC25A18Q9H1K4 315 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 LANCL2Q9NS86 450 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 TUBD1Q9UJT1 453 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 TP53TG5Q9Y2B4 290 aa14.36□□□□□ -0.11
LIG1-219ENST00000600055 FAM227AF5H4B4 570 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 G3V2L1 256 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 H0YIV9 168 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 MKRN2OSH3BPM6 223 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 SAP18O00422 153 aaKnown RBP14.35□□□□□ -0.11
LIG1-219ENST00000600055 RTCAO00442 366 aaKnown RBP14.35□□□□□ -0.11
LIG1-219ENST00000600055 COPEO14579 308 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 UGDHO60701 494 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 CEACAM4O75871 244 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 CLDN9O95484 217 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 PROCP04070 461 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 SFTPCP11686 197 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 ACPPP15309 386 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 CRHR1P34998 444 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 NEK2P51955 445 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 HERVK_113P63132 956 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 SKP1P63208 163 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 NFATC3Q12968 1075 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 ZRSR2Q15696 482 aaKnown RBP14.35□□□□□ -0.11
LIG1-219ENST00000600055 TUBB8Q3ZCM7 444 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 ZNF678Q5SXM1 525 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 TRIM40Q6P9F5 258 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 TMEM205Q6UW68 189 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 LANCL3Q6ZV70 420 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 RIBC1Q8N443 379 aaPredicted RBP14.35□□□□□ -0.11
LIG1-219ENST00000600055 ZNF843Q8N446 348 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 FDCSPQ8NFU4 85 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 TRPC4APQ8TEL6 797 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 NACC2Q96BF6 587 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 MTFMTQ96DP5 389 aaKnown RBP14.35□□□□□ -0.11
LIG1-219ENST00000600055 SLC25A23Q9BV35 468 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 NTMT1Q9BV86 223 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 C1QTNF3Q9BXJ4 246 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 ERVK-6Q9BXR3 956 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms