RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 A0A1B0GVC2 190 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 TCRBV16S1A1N1A0A5B0 115 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 A8MVJ9 347 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 SYT5O00445 386 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 CHST10O43529 356 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 ZBTB14O43829 449 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 APRTP07741 180 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 IMPA1P29218 277 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 STIP1P31948 543 aaKnown RBP9.43□□□□□ -0.9
TRIM28-210ENST00000597618 COILP38432 576 aaPredicted RBP9.43□□□□□ -0.9
TRIM28-210ENST00000597618 SKIV2L2P42285 1042 aaKnown RBP9.43□□□□□ -0.9
TRIM28-210ENST00000597618 TBPL1P62380 186 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 KLF1Q13351 362 aaPredicted RBP9.43□□□□□ -0.9
TRIM28-210ENST00000597618 SPA17Q15506 151 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 TERF2Q15554 542 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 RIPPLY2Q5TAB7 128 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 RTL6Q6ICC9 239 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 GK5Q6ZS86 529 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 TRILQ7L0X0 811 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 FAM109AQ8N4B1 249 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 APCDD1LQ8NCL9 501 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 LRRN4CLQ8ND94 238 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 ZNF740Q8NDX6 193 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 ARMC2Q8NEN0 867 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 B3GNT7Q8NFL0 401 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 OR2M7Q8NG81 312 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 ASB11Q8WXH4 323 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 SLCO2A1Q92959 643 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 TTTY12Q9BZ98 90 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 IL22Q9GZX6 179 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 ZNF395Q9H8N7 513 aaPredicted RBP9.43□□□□□ -0.9
TRIM28-210ENST00000597618 PRDM9Q9NQV7 894 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 RAB6BQ9NRW1 208 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 DEPPQ9NTK1 212 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 HPF1Q9NWY4 346 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 KCMF1Q9P0J7 381 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 GALPQ9UBC7 116 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 FBXW2Q9UKT8 454 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 ACAD8Q9UKU7 415 aa9.43□□□□□ -0.9
TRIM28-210ENST00000597618 YARS2Q9Y2Z4 477 aaKnown RBP9.43□□□□□ -0.9
TRIM28-210ENST00000597618 SYCE3A1L190 88 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 PINLYPA6NC86 204 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 AKR1B15C9JRZ8 316 aaPredicted RBP9.42□□□□□ -0.9
TRIM28-210ENST00000597618 GFYI3L273 518 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 PSMD12O00232 456 aaPredicted RBP9.42□□□□□ -0.9
TRIM28-210ENST00000597618 AQP7O14520 342 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 NDUFS4O43181 175 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 MYO1DO94832 1006 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 GLSO94925 669 aaPredicted RBP9.42□□□□□ -0.9
TRIM28-210ENST00000597618 VAPBO95292 243 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 IFNB1P01574 187 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 MPC1LP0DKB6 136 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 ENO3P13929 434 aaPredicted RBP9.42□□□□□ -0.9
TRIM28-210ENST00000597618 GABRA1P14867 456 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 ALOX12P18054 663 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 MAOAP21397 527 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 ARNTP27540 789 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 CLCN7P51798 805 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 NAP1L1P55209 391 aaKnown RBP9.42□□□□□ -0.9
TRIM28-210ENST00000597618 SESN2P58004 480 aaPredicted RBP9.42□□□□□ -0.9
TRIM28-210ENST00000597618 DCAF7P61962 342 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 OLR1P78380 273 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 CRADDP78560 199 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 PWP1Q13610 501 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 DAZAP2Q15038 168 aaPredicted RBP9.42□□□□□ -0.9
TRIM28-210ENST00000597618 PCBP2Q15366 365 aaKnown RBP eCLIP9.42□□□□□ -0.9
TRIM28-210ENST00000597618 DEFB134Q4QY38 66 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 WLSQ5T9L3 541 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 SHEQ5VZ18 495 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 CHSY3Q70JA7 882 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 ABHD13Q7L211 337 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 C17orf64Q86WR6 236 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 KRTAP1-3Q8IUG1 177 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 PIAS4Q8N2W9 510 aaPredicted RBP9.42□□□□□ -0.9
TRIM28-210ENST00000597618 MFSD9Q8NBP5 474 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 RNASE6Q93091 150 aaKnown RBP9.42□□□□□ -0.9
TRIM28-210ENST00000597618 SARAFQ96BY9 339 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 VMP1Q96GC9 406 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 CCDC77Q9BR77 488 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 CLK4Q9HAZ1 481 aaKnown RBP9.42□□□□□ -0.9
TRIM28-210ENST00000597618 BEX4Q9NWD9 120 aaPredicted RBP9.42□□□□□ -0.9
TRIM28-210ENST00000597618 KLHL42Q9P2K6 505 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 FOXD3Q9UJU5 478 aaPredicted RBP9.42□□□□□ -0.9
TRIM28-210ENST00000597618 VPS9D1Q9Y2B5 631 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 CRYL1Q9Y2S2 319 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 LIPGQ9Y5X9 500 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 MXRA5Q9NR99 2828 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 ZANQ9Y493 2812 aa9.42□□□□□ -0.9
TRIM28-210ENST00000597618 A0A0G2JMM0 328 aa9.41□□□□□ -0.9
TRIM28-210ENST00000597618 A0A1W2PPB8 328 aa9.41□□□□□ -0.9
TRIM28-210ENST00000597618 A0A1W2PRS3 328 aa9.41□□□□□ -0.9
TRIM28-210ENST00000597618 HSPB2A8KAH6 182 aa9.41□□□□□ -0.9
TRIM28-210ENST00000597618 KIR3DP1A8MWS1 328 aa9.41□□□□□ -0.9
TRIM28-210ENST00000597618 AP3B1O00203 1094 aa9.41□□□□□ -0.9
TRIM28-210ENST00000597618 DVL2O14641 736 aa9.41□□□□□ -0.9
TRIM28-210ENST00000597618 SLC16A5O15375 505 aa9.41□□□□□ -0.9
TRIM28-210ENST00000597618 SUSD5O60279 629 aa9.41□□□□□ -0.9
TRIM28-210ENST00000597618 LCMT2O60294 686 aaKnown RBP9.41□□□□□ -0.9
TRIM28-210ENST00000597618 CEP104O60308 925 aa9.41□□□□□ -0.9
TRIM28-210ENST00000597618 GOSR1O95249 250 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms