RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ZNF888P0CJ79 500 aaPredicted RBP13.95□□□□□ -0.18
VRK3-212ENST00000596814 JAK1P23458 1154 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 TACR1P25103 407 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 TSFMP43897 325 aaKnown RBP13.95□□□□□ -0.18
VRK3-212ENST00000596814 UFM1P61960 85 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 ZNF763Q0D2J5 394 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 KCNAB1Q14722 419 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 WASHC2DQ5SRD0 308 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 OR4C11Q6IEV9 310 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 CCDC121Q6ZUS5 278 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 ABHD13Q7L211 337 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 DGLUCYQ7Z3D6 616 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 ARHGAP22Q7Z5H3 698 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 CLHC1Q8NHS4 586 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 SLC45A3Q96JT2 553 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 ZNF285Q96NJ3 590 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 TBCDQ9BTW9 1192 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 ACTL8Q9H568 366 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 ARL8BQ9NVJ2 186 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 IRAK4Q9NWZ3 460 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 CCDC167Q9P0B6 97 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 BAIAP2L1Q9UHR4 511 aa13.95□□□□□ -0.18
VRK3-212ENST00000596814 ANKRD28O15084 1053 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 EEDO75530 441 aaKnown RBP13.94□□□□□ -0.18
VRK3-212ENST00000596814 SLC22A3O75751 556 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 CBX6O95503 412 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 TPP2P29144 1249 aaPredicted RBP13.94□□□□□ -0.18
VRK3-212ENST00000596814 ASMTP46597 345 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 RAB8AP61006 207 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 HERC3Q15034 1050 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 MAPRE2Q15555 327 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 TCTE1Q5JU00 501 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 CCNYL2Q5T2Q4 361 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 PHF19Q5T6S3 580 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 TMEM214Q6NUQ4 689 aaKnown RBP13.94□□□□□ -0.18
VRK3-212ENST00000596814 ZNF793Q6ZN11 406 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 GK5Q6ZS86 529 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 SLITRK4Q8IW52 837 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 CDC26Q8NHZ8 85 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 UTP15Q8TED0 518 aaKnown RBP13.94□□□□□ -0.18
VRK3-212ENST00000596814 TEFMQ96QE5 360 aaKnown RBP13.94□□□□□ -0.18
VRK3-212ENST00000596814 DPY30Q9C005 99 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 DDX31Q9H8H2 851 aaKnown RBP13.94□□□□□ -0.18
VRK3-212ENST00000596814 COPS7BQ9H9Q2 264 aaPredicted RBP13.94□□□□□ -0.18
VRK3-212ENST00000596814 STARD5Q9NSY2 213 aa13.94□□□□□ -0.18
VRK3-212ENST00000596814 CTSBP07858 339 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 MSL3P1P0C860 447 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 HIST1H1TP22492 207 aaPredicted RBP13.93□□□□□ -0.18
VRK3-212ENST00000596814 PRDX6P30041 224 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 MAPK12P53778 367 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 CLDN8P56748 225 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 ILKQ13418 452 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 GPR19Q15760 415 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 PRTGQ2VWP7 1150 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 POU5F2Q8N7G0 328 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 RCBTB1Q8NDN9 531 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 OR8K5Q8NH50 307 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 PROKR1Q8TCW9 393 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 CMTM5Q96DZ9 223 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 EGLN2Q96KS0 407 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 TEX37Q96LM6 180 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 ZBTB18Q99592 522 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 ROGDIQ9GZN7 287 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 FANCEQ9HB96 536 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 PRDM7Q9NQW5 492 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 TMEM45AQ9NWC5 275 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 TAGLN3Q9UI15 199 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 COL27A1Q8IZC6 1860 aaPredicted RBP13.93□□□□□ -0.18
VRK3-212ENST00000596814 A0A088AWK7 358 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 A0A0A6YYD5 115 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 TMEM150CB9EJG8 249 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 C9JVG2 144 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 NR5A2O00482 541 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 RFPL3O75679 317 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 KIAA0754O94854 1291 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 SMIM10L1P0DMW3 83 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 COX4I1P13073 169 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 FOLR1P15328 257 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 CD1EP15812 388 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 ALOX12P18054 663 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 ZNF10P21506 573 aaPredicted RBP13.93□□□□□ -0.18
VRK3-212ENST00000596814 ATP5A1P25705 553 aaKnown RBP13.93□□□□□ -0.18
VRK3-212ENST00000596814 CERS1P27544 350 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 CLNS1AP54105 237 aaKnown RBP13.93□□□□□ -0.18
VRK3-212ENST00000596814 BTN3A2P78410 334 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 TRA2AQ13595 282 aaKnown RBP eCLIP13.93□□□□□ -0.18
VRK3-212ENST00000596814 CCDC157Q569K6 752 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 ZNF771Q7L3S4 317 aaPredicted RBP13.93□□□□□ -0.18
VRK3-212ENST00000596814 PIP4P1Q86T03 277 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 SNX32Q86XE0 403 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 FUNDC1Q8IVP5 155 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 ZCCHC7Q8N3Z6 543 aaKnown RBP13.93□□□□□ -0.18
VRK3-212ENST00000596814 KRTCAP2Q8N6L1 136 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 GLB1L3Q8NCI6 653 aaPredicted RBP13.93□□□□□ -0.18
VRK3-212ENST00000596814 RP9Q8TA86 221 aaKnown RBP13.93□□□□□ -0.18
VRK3-212ENST00000596814 C16orf78Q8WTQ4 265 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 SMIM10Q96HG1 83 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 NSL1Q96IY1 281 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 TUBB6Q9BUF5 446 aa13.93□□□□□ -0.18
VRK3-212ENST00000596814 MYNNQ9NPC7 610 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms