RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 SMIM10Q96HG1 83 aa13.45□□□□□ -0.26
VMP1-206ENST00000587945 VPS39Q96JC1 886 aa13.45□□□□□ -0.26
VMP1-206ENST00000587945 RHOJQ9H4E5 214 aa13.45□□□□□ -0.26
VMP1-206ENST00000587945 CAB39LQ9H9S4 337 aa13.45□□□□□ -0.26
VMP1-206ENST00000587945 GPAMQ9HCL2 828 aa13.45□□□□□ -0.26
VMP1-206ENST00000587945 NECTIN3Q9NQS3 549 aa13.45□□□□□ -0.26
VMP1-206ENST00000587945 MTO1Q9Y2Z2 717 aaKnown RBP13.45□□□□□ -0.26
VMP1-206ENST00000587945 CXorf49A8MYA2 514 aaPredicted RBP13.44□□□□□ -0.26
VMP1-206ENST00000587945 CCDC188H7C350 402 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 PSMD12O00232 456 aaPredicted RBP13.44□□□□□ -0.26
VMP1-206ENST00000587945 CCL21O00585 134 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 ZNHIT1O43257 154 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 NEURL1O76050 574 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 SERPINA6P08185 405 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 C1GALT1C1LP0DN25 315 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 RNH1P13489 461 aaKnown RBP13.44□□□□□ -0.26
VMP1-206ENST00000587945 PRF1P14222 555 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 CD46P15529 392 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 CA7P43166 264 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 BTN3A2P78410 334 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 CDKL1Q00532 357 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 SLBPQ14493 270 aaKnown RBP eCLIP13.44□□□□□ -0.26
VMP1-206ENST00000587945 FBXO48Q5FWF7 155 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 NIPAL1Q6NVV3 410 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 SLCO4C1Q6ZQN7 724 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 QSOX2Q6ZRP7 698 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 GALNTL5Q7Z4T8 443 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 RPS19BP1Q86WX3 136 aaKnown RBP13.44□□□□□ -0.26
VMP1-206ENST00000587945 CA13Q8N1Q1 262 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 ITLN2Q8WWU7 325 aaPredicted RBP13.44□□□□□ -0.26
VMP1-206ENST00000587945 ANKRD7Q92527 254 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 RHBDF1Q96CC6 855 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 SCMH1Q96GD3 660 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 MCMBPQ9BTE3 642 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 DPH5Q9H2P9 285 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 LRFN1Q9P244 771 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 PCDHGB6Q9Y5F9 930 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 DIDO1Q9BTC0 2240 aaKnown RBP13.44□□□□□ -0.26
VMP1-206ENST00000587945 SCN3AQ9NY46 2000 aa13.44□□□□□ -0.26
VMP1-206ENST00000587945 IGKV3D-11A0A0A0MRZ8 115 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 TCRBV16S1A1N1A0A5B0 115 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 URADA6NGE7 173 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 NPIPA5E9PKD4 350 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 TAPBPO15533 448 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 PHGDHO43175 533 aaKnown RBP13.43□□□□□ -0.26
VMP1-206ENST00000587945 SLC19A2O60779 497 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 H2AFYO75367 372 aaKnown RBP13.43□□□□□ -0.26
VMP1-206ENST00000587945 SP1P08047 785 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 GRNP28799 593 aaKnown RBP13.43□□□□□ -0.26
VMP1-206ENST00000587945 TPP2P29144 1249 aaPredicted RBP13.43□□□□□ -0.26
VMP1-206ENST00000587945 EEF1DP29692 281 aaKnown RBP13.43□□□□□ -0.26
VMP1-206ENST00000587945 SSTR1P30872 391 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 SLC6A12P48065 614 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 HNMTP50135 292 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 ALDH6A1Q02252 535 aaKnown RBP13.43□□□□□ -0.26
VMP1-206ENST00000587945 RBPJQ06330 500 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 C3AR1Q16581 482 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 MAPKAPK3Q16644 382 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 SLC25A25Q6KCM7 469 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.43□□□□□ -0.26
VMP1-206ENST00000587945 ADAMTSL2Q86TH1 951 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 NFAM1Q8NET5 270 aaPredicted RBP13.43□□□□□ -0.26
VMP1-206ENST00000587945 PYROXD1Q8WU10 500 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 CCT6BQ92526 530 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 MARVELD3Q96A59 401 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 ESAMQ96AP7 390 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 FRMD6Q96NE9 622 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 SAYSD1Q9NPB0 183 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 PRDM9Q9NQV7 894 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 SUCOQ9UBS9 1254 aaKnown RBP13.43□□□□□ -0.26
VMP1-206ENST00000587945 TINAGQ9UJW2 476 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 NPIPA1Q9UND3 350 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 ENTPD4Q9Y227 616 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 CELSR2Q9HCU4 2923 aa13.43□□□□□ -0.26
VMP1-206ENST00000587945 ITPR2Q14571 2701 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 ZGRF1Q86YA3 2104 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 ASPDHA6ND91 283 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 SAGE2PA6NJ88 616 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 HNRNPRO43390 633 aaKnown RBP13.42□□□□□ -0.26
VMP1-206ENST00000587945 PRAMEF4O60810 478 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 WISP3O95389 354 aaPredicted RBP13.42□□□□□ -0.26
VMP1-206ENST00000587945 GNAZP19086 355 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 HNRNPH1P31943 449 aaKnown RBP13.42□□□□□ -0.26
VMP1-206ENST00000587945 GMPRP36959 345 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 SLC12A2P55011 1212 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 MLF1P58340 268 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 STXBP1P61764 594 aaKnown RBP13.42□□□□□ -0.26
VMP1-206ENST00000587945 RUNX2Q13950 521 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 TGFBIQ15582 683 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 PRAMEF9Q5VWM5 478 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 ADNP2Q6IQ32 1131 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 TMIGD1Q6UXZ0 262 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 MRGPRGQ86SM5 289 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 ZNF227Q86WZ6 799 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 SRRM1Q8IYB3 904 aaKnown RBP13.42□□□□□ -0.26
VMP1-206ENST00000587945 KLHDC8AQ8IYD2 350 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 SLC34A3Q8N130 599 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 LGI4Q8N135 537 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 TMEM178AQ8NBL3 297 aa13.42□□□□□ -0.26
VMP1-206ENST00000587945 TMEM52Q8NDY8 209 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms