RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 IMP3Q9NV31 184 aaKnown RBP10.78□□□□□ -0.68
LIG3-204ENST00000585740 USE1Q9NZ43 259 aa10.78□□□□□ -0.68
LIG3-204ENST00000585740 IFT80Q9P2H3 777 aaPredicted RBP10.78□□□□□ -0.68
LIG3-204ENST00000585740 MMP17Q9ULZ9 603 aa10.78□□□□□ -0.68
LIG3-204ENST00000585740 ICKQ9UPZ9 632 aa10.78□□□□□ -0.68
LIG3-204ENST00000585740 BTBD3Q9Y2F9 522 aa10.78□□□□□ -0.68
LIG3-204ENST00000585740 WDR37Q9Y2I8 494 aa10.78□□□□□ -0.68
LIG3-204ENST00000585740 CFAP20Q9Y6A4 193 aaKnown RBP10.78□□□□□ -0.68
LIG3-204ENST00000585740 F5P12259 2224 aa10.78□□□□□ -0.68
LIG3-204ENST00000585740 A0A1W2PRB8 838 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 G3V2T6 193 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 UPK1AO00322 258 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 DLGAP1O14490 977 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 NDUFS4O43181 175 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 H6PDO95479 791 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 CLPTM1O96005 669 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 FUCA1P04066 466 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 SMIM18P0DKX4 95 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 CMPK1P30085 196 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 MAT2AP31153 395 aaKnown RBP10.77□□□□□ -0.69
LIG3-204ENST00000585740 AKT2P31751 481 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 SHMT2P34897 504 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 MAGEA2P43356 314 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 ARSFP54793 590 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 PPP2CBP62714 309 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 PPP2CAP67775 309 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 TUBA4AP68366 448 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 CSNK1G2P78368 415 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 VAC14Q08AM6 782 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 CLCA4Q14CN2 919 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 HEPACAMQ14CZ8 416 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 RGNQ15493 299 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 RPE65Q16518 533 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 RFX4Q33E94 735 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.77□□□□□ -0.69
LIG3-204ENST00000585740 KCTD21Q4G0X4 260 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 ZNF385BQ569K4 471 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 TTC23Q5W5X9 447 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 ANKRD26P1Q6NSI1 321 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 DUS1LQ6P1R4 473 aaKnown RBP10.77□□□□□ -0.69
LIG3-204ENST00000585740 TRIM40Q6P9F5 258 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 IYDQ6PHW0 289 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 ABRAXAS1Q6UWZ7 409 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 CBLL1Q75N03 491 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 NUDT13Q86X67 352 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 PTOV1Q86YD1 416 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 CLEC4FQ8N1N0 589 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 C2orf73Q8N5S3 287 aaPredicted RBP10.77□□□□□ -0.69
LIG3-204ENST00000585740 FAM47BQ8NA70 645 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 C11orf65Q8NCR3 313 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 ZNF740Q8NDX6 193 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 PRSS33Q8NF86 280 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 MAGEE2Q8TD90 523 aaPredicted RBP10.77□□□□□ -0.69
LIG3-204ENST00000585740 MRGPRX1Q96LB2 322 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 RBM4BQ9BQ04 359 aaKnown RBP10.77□□□□□ -0.69
LIG3-204ENST00000585740 SARGQ9BW04 601 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 RBM4Q9BWF3 364 aaKnown RBP10.77□□□□□ -0.69
LIG3-204ENST00000585740 CARS2Q9HA77 564 aaKnown RBP10.77□□□□□ -0.69
LIG3-204ENST00000585740 NTN4Q9HB63 628 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 TM9SF3Q9HD45 589 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 MRPS30Q9NP92 439 aaKnown RBP10.77□□□□□ -0.69
LIG3-204ENST00000585740 MIEF1Q9NQG6 463 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 CUEDC1Q9NWM3 386 aaPredicted RBP10.77□□□□□ -0.69
LIG3-204ENST00000585740 TUBA8Q9NY65 449 aaPredicted RBP10.77□□□□□ -0.69
LIG3-204ENST00000585740 TAS2R9Q9NYW1 312 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 BAG5Q9UL15 447 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 EXO1Q9UQ84 846 aaKnown RBP10.77□□□□□ -0.69
LIG3-204ENST00000585740 HS3ST3A1Q9Y663 406 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 AK5Q9Y6K8 562 aa10.77□□□□□ -0.69
LIG3-204ENST00000585740 ZNF318Q5VUA4 2279 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 C19orf67A6NJJ6 358 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 H3BNH8 94 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 H7BY64 318 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 SAP18O00422 153 aaKnown RBP10.76□□□□□ -0.69
LIG3-204ENST00000585740 PLPP1O14494 284 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 YY2O15391 372 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 MAP3K13O43283 966 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 OR1F1O43749 312 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 DPM1O60762 260 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 ZNF682O95780 498 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 C6orf47O95873 294 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 B3GALT4O96024 378 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 MT-ND1P03886 318 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 IL3P08700 152 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 PABPC4LP0CB38 370 aaKnown RBP10.76□□□□□ -0.69
LIG3-204ENST00000585740 THRBP10828 461 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 DDCP20711 480 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 UQCRC2P22695 453 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 TPP2P29144 1249 aaPredicted RBP10.76□□□□□ -0.69
LIG3-204ENST00000585740 BSGP35613 385 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 AHRP35869 848 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 NUDT1P36639 197 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 ARHGDIAP52565 204 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 MAPK12P53778 367 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 NR1H2P55055 460 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 SH3BGRP55822 239 aaPredicted RBP10.76□□□□□ -0.69
LIG3-204ENST00000585740 SLC14A1Q13336 389 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 APOFQ13790 326 aa10.76□□□□□ -0.69
LIG3-204ENST00000585740 LRRC23Q53EV4 343 aaPredicted RBP10.76□□□□□ -0.69
LIG3-204ENST00000585740 GCNT6Q5T4J0 391 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms