RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 POPDC3Q9HBV1 291 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 ANKRD10Q9NXR5 420 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 COPG2Q9UBF2 871 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 SCN2AQ99250 2005 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 FAM227AF5H4B4 570 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 CDK2AP1O14519 115 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 HNRNPRO43390 633 aaKnown RBP19.22■□□□□ 0.67
SHMT1-209ENST00000582653 WISP3O95389 354 aaPredicted RBP19.22■□□□□ 0.67
SHMT1-209ENST00000582653 SMIM10L1P0DMW3 83 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 C1GALT1C1LP0DN25 315 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 CD96P40200 585 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 HNMTP50135 292 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 OR4D2P58180 307 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 SKP1P63208 163 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 POU4F1Q01851 419 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 TUBA3CQ13748 450 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 USP10Q14694 798 aaKnown RBP19.22■□□□□ 0.67
SHMT1-209ENST00000582653 TGFBIQ15582 683 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 FBXO48Q5FWF7 155 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 TOR1AIP1Q5JTV8 583 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 TUBA3EQ6PEY2 450 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 C3orf62Q6ZUJ4 267 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 CRLF3Q8IUI8 442 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 TRPV3Q8NET8 790 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 ESAMQ96AP7 390 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 SMIM10Q96HG1 83 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 DERL2Q9GZP9 239 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 RHBGQ9H310 441 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 CLK4Q9HAZ1 481 aaKnown RBP19.22■□□□□ 0.67
SHMT1-209ENST00000582653 SVILO95425 2214 aa19.22■□□□□ 0.67
SHMT1-209ENST00000582653 DIDO1Q9BTC0 2240 aaKnown RBP19.21■□□□□ 0.67
SHMT1-209ENST00000582653 TRGV8A0A0C4DH27 118 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 TCRBV9S1A1TA0A576 114 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 TAPBPO15533 448 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 CCDC166P0CW27 439 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 GMPRP36959 345 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 SLC6A12P48065 614 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 GPX6P59796 221 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 PMP22Q01453 160 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 ART3Q13508 389 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 TRADDQ15628 312 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 SLCO4C1Q6ZQN7 724 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 CYP4X1Q8N118 509 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 CDKL2Q92772 493 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 PTCHD1Q96NR3 888 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 SIGLEC12Q96PQ1 595 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 UTP23Q9BRU9 249 aaKnown RBP19.21■□□□□ 0.67
SHMT1-209ENST00000582653 TXNDC16Q9P2K2 825 aa19.21■□□□□ 0.67
SHMT1-209ENST00000582653 A0A0G2JN53 185 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 URADA6NGE7 173 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 FAM159BA6NKW6 160 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 ENO4A6NNW6 628 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 EIF3HO15372 352 aaKnown RBP eCLIP19.2■□□□□ 0.66
SHMT1-209ENST00000582653 H2AFYO75367 372 aaKnown RBP19.2■□□□□ 0.66
SHMT1-209ENST00000582653 WISP2O76076 250 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 C1QAP02745 245 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 SERPINA6P08185 405 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 GNAZP19086 355 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 MAOAP21397 527 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 JAK1P23458 1154 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 CASQ1P31415 396 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 CA7P43166 264 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 PLTPP55058 493 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 SLC26A5P58743 744 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 RBPJQ06330 500 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 OR4D1Q15615 310 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 SPINK14Q6IE38 97 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.2■□□□□ 0.66
SHMT1-209ENST00000582653 KLHDC8AQ8IYD2 350 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 KIF2BQ8N4N8 673 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 MDS2Q8NDY4 140 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 ELP5Q8TE02 316 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 TSPAN17Q96FV3 270 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 RBBP8Q99708 897 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 CPNE1Q99829 537 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 TMEM79Q9BSE2 394 aa19.2■□□□□ 0.66
SHMT1-209ENST00000582653 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.2■□□□□ 0.66
SHMT1-209ENST00000582653 A8MUA0 341 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 CCL21O00585 134 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 PRMT3O60678 531 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 FAM155BO75949 473 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 CD46P15529 392 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 CD1DP15813 335 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 BTN3A2P78410 334 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 SLBPQ14493 270 aaKnown RBP eCLIP19.19■□□□□ 0.66
SHMT1-209ENST00000582653 OR1C1Q15619 314 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 KRTCAP3Q53RY4 240 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 MTFR2Q6P444 385 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 TMIGD1Q6UXZ0 262 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 SYT10Q6XYQ8 523 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 GPSM1Q86YR5 675 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 CTAGE3PQ8IX95 158 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 LGI4Q8N135 537 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 CA13Q8N1Q1 262 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 SLC5A8Q8N695 610 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 CCT6BQ92526 530 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 MARVELD3Q96A59 401 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 SCMH1Q96GD3 660 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 GPR22Q99680 433 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 HES7Q9BYE0 225 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms