RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 FUNDC2Q9BWH2 189 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 DGCR6LQ9BY27 220 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 CCDC90BQ9GZT6 254 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 TMEM245Q9H330 911 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 MYNNQ9NPC7 610 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 KRT84Q9NSB2 600 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 DPP7Q9UHL4 492 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 RAPGEFL1Q9UHV5 662 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 TSC22D4Q9Y3Q8 395 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 RWDD3Q9Y3V2 267 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 PCDHGB3Q9Y5G1 929 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 GPR37L1O60883 481 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 INMTO95050 263 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 C6orf47O95873 294 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 ETFAP13804 333 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 HTR1BP28222 390 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 EPHA2P29317 976 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 FMO3P31513 532 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 CRATP43155 626 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 RXRGP48443 463 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 GP2P55259 537 aaKnown RBP9.66□□□□□ -0.86
VPS53-220ENST00000576149 SLC35A2P78381 396 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 C2orf80Q0P641 193 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 ZNF234Q14588 700 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 MPEG1Q2M385 716 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 IER5LQ5T953 404 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 KIAA1614Q5VZ46 1190 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 LAIR1Q6GTX8 287 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 CRTC3Q6UUV7 619 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 FAM83HQ6ZRV2 1179 aaPredicted RBP9.66□□□□□ -0.86
VPS53-220ENST00000576149 SLC16A12Q6ZSM3 486 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 TSEN54Q7Z6J9 526 aaKnown RBP9.66□□□□□ -0.86
VPS53-220ENST00000576149 ZNF740Q8NDX6 193 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 OR52N2Q8NGI0 321 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 FAM81AQ8TBF8 368 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 FAR1Q8WVX9 515 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 C17orf50Q8WW18 174 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 UBE2E3Q969T4 207 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 PPCDCQ96CD2 204 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 MTERF3Q96E29 417 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 SLC35A5Q9BS91 424 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 OR52A5Q9H2C5 316 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 PREBQ9HCU5 417 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 KIF17Q9P2E2 1029 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 AASSQ9UDR5 926 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 WARS2Q9UGM6 360 aaKnown RBP9.66□□□□□ -0.86
VPS53-220ENST00000576149 ACAD8Q9UKU7 415 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 TPRKBQ9Y3C4 175 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 PCYT1BQ9Y5K3 369 aaPredicted RBP9.66□□□□□ -0.86
VPS53-220ENST00000576149 LRRK1Q38SD2 2015 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 SH3PXD2BA1X283 911 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 HEPACAM2A8MVW5 462 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 ZNF99A8MXY4 864 aaPredicted RBP9.66□□□□□ -0.86
VPS53-220ENST00000576149 NDUFS2O75306 463 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 BCL10O95999 233 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 CD6P30203 668 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 TAS2R50P59544 299 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 RBBP4Q09028 425 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 NPRL3Q12980 569 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 MAD2L1BPQ15013 274 aaPredicted RBP9.66□□□□□ -0.86
VPS53-220ENST00000576149 NPTX1Q15818 432 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 MOGQ16653 247 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 ZNF829Q3KNS6 432 aaPredicted RBP9.66□□□□□ -0.86
VPS53-220ENST00000576149 FAM78AQ5JUQ0 283 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 PRAMEF14Q5SWL7 426 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 PRAMEF13Q5VWM6 474 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 LCTLQ6UWM7 567 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 ANGPTL8Q6UXH0 198 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 VN1R5Q7Z5H4 357 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 FAM124AQ86V42 546 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 SFTPA1Q8IWL2 248 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 FNDC8Q8TC99 324 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 PHOSPHO2Q8TCD6 241 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 SMG7Q92540 1137 aaKnown RBP9.66□□□□□ -0.86
VPS53-220ENST00000576149 CIDECQ96AQ7 238 aaPredicted RBP9.66□□□□□ -0.86
VPS53-220ENST00000576149 PITX2Q99697 317 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 MYOCQ99972 504 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 TMEM38AQ9H6F2 299 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 RUBCNLQ9H714 662 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 DYRK4Q9NR20 520 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 NDUFAF4Q9P032 175 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 ERVK-18Q9QC07 812 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 ENPP5Q9UJA9 477 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 ASF1AQ9Y294 204 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 PCM1Q15154 2024 aa9.66□□□□□ -0.86
VPS53-220ENST00000576149 MUC22E2RYF6 1773 aaPredicted RBP9.65□□□□□ -0.86
VPS53-220ENST00000576149 RB1P06400 928 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 KLK1P06870 262 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 PTX3P26022 381 aaPredicted RBP9.65□□□□□ -0.86
VPS53-220ENST00000576149 ACVR2AP27037 513 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 RRM2P31350 389 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 TSPAN7P41732 249 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 PHEXP78562 749 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 FCHO2Q0JRZ9 810 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 FADDQ13158 208 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 ELOAQ14241 798 aaKnown RBP9.65□□□□□ -0.86
VPS53-220ENST00000576149 PRSS53Q2L4Q9 553 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 GCNT6Q5T4J0 391 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 PSRC1Q6PGN9 363 aaPredicted RBP9.65□□□□□ -0.86
VPS53-220ENST00000576149 TMIGD1Q6UXZ0 262 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms