RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ANKRD53Q8N9V6 530 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.31□□□□□ -1.4
VPS53-213ENST00000572334 CAMKVQ8NCB2 501 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 NFAM1Q8NET5 270 aaPredicted RBP6.31□□□□□ -1.4
VPS53-213ENST00000572334 M1APQ8TC57 530 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 MIPOL1Q8TD10 442 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 CALML6Q8TD86 181 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 THAP3Q8WTV1 239 aaPredicted RBP6.31□□□□□ -1.4
VPS53-213ENST00000572334 SLC13A3Q8WWT9 602 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 PYCR2Q96C36 320 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 SMIM10Q96HG1 83 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 ZNF354BQ96LW1 612 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 GPR137Q96N19 417 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 OLFM1Q99784 485 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 TRIM51Q9BSJ1 452 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 PCBD2Q9H0N5 130 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 TSPAN10Q9H1Z9 355 aaPredicted RBP6.31□□□□□ -1.4
VPS53-213ENST00000572334 CCDC68Q9H2F9 335 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 KLHL31Q9H511 634 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 TRIM45Q9H8W5 580 aaPredicted RBP6.31□□□□□ -1.4
VPS53-213ENST00000572334 KCNK13Q9HB14 408 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 PARVBQ9HBI1 364 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 ANKHQ9HCJ1 492 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 KLHL1Q9NR64 748 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 SAMD15Q9P1V8 674 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 SH3BGRL2Q9UJC5 107 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 PPP2R2CQ9Y2T4 447 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 CLDN16Q9Y5I7 305 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 MAD1L1Q9Y6D9 718 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 MPDZO75970 2070 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 GABRR3A8MPY1 467 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 TGFBR3LH3BV60 316 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 CHST10O43529 356 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 SHOX2O60902 331 aaPredicted RBP6.3□□□□□ -1.4
VPS53-213ENST00000572334 TBX6O95947 436 aaPredicted RBP6.3□□□□□ -1.4
VPS53-213ENST00000572334 C8GP07360 202 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 FHP07954 510 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 SNRPB2P08579 225 aaKnown RBP6.3□□□□□ -1.4
VPS53-213ENST00000572334 PGAM1P18669 254 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 ELAVL4P26378 380 aaKnown RBP6.3□□□□□ -1.4
VPS53-213ENST00000572334 SCTRP47872 440 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 NR0B1P51843 470 aaKnown RBP6.3□□□□□ -1.4
VPS53-213ENST00000572334 GYS2P54840 703 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 KRTAP10-9P60411 292 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 AP2B1P63010 937 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 HSF1Q00613 529 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 SP140Q13342 867 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 PWP1Q13610 501 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 CASP8Q14790 479 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 NSDHLQ15738 373 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 EXT1Q16394 746 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 PPP1R3AQ16821 1122 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 CEP85LQ5SZL2 805 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 TEDDM1Q5T9Z0 273 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 MFSD4BQ5TF39 518 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 TRMT10BQ6PF06 316 aaKnown RBP6.3□□□□□ -1.4
VPS53-213ENST00000572334 GALNTL5Q7Z4T8 443 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 STRA8Q7Z7C7 330 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 GALNT7Q86SF2 657 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 SPPL2CQ8IUH8 684 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 PPIL6Q8IXY8 311 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 LGI4Q8N135 537 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 ARMC10Q8N2F6 343 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 NT5CQ8TCD5 201 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 MCOLN3Q8TDD5 553 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 UTP15Q8TED0 518 aaKnown RBP6.3□□□□□ -1.4
VPS53-213ENST00000572334 CREB3L4Q8TEY5 395 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 METTL21AQ8WXB1 218 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 NEIL2Q969S2 332 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 DTNBP1Q96EV8 351 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 LINGO1Q96FE5 620 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 SNF8Q96H20 258 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 PBKQ96KB5 322 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 LURAP1Q96LR2 239 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 PWWP2AQ96N64 755 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 OR1F2PQ96R84 312 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 DMRTA2Q96SC8 542 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 FAM167BQ9BTA0 163 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 SLC6A16Q9GZN6 736 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 CDCP1Q9H5V8 836 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 NECTIN3Q9NQS3 549 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 ETAA1Q9NY74 926 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 C19orf25Q9UFG5 118 aaPredicted RBP6.3□□□□□ -1.4
VPS53-213ENST00000572334 TEKT2Q9UIF3 430 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 TRMT6Q9UJA5 497 aaKnown RBP6.3□□□□□ -1.4
VPS53-213ENST00000572334 ZNF223Q9UK11 482 aaPredicted RBP6.3□□□□□ -1.4
VPS53-213ENST00000572334 MEMO1Q9Y316 297 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 ASB1Q9Y576 335 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 HRH3Q9Y5N1 445 aa6.3□□□□□ -1.4
VPS53-213ENST00000572334 EXPH5Q8NEV8 1989 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 TCRBV16S1A1N1A0A5B0 115 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 TRBC2A0A5B9 178 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 SAGE2PA6NJ88 616 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 NPIPA5E9PKD4 350 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 FAM227AF5H4B4 570 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 DNALI1O14645 258 aaPredicted RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 TTI1O43156 1089 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 NDUFS4O43181 175 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 ASNA1O43681 348 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 OR1F1O43749 312 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms