RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 GPR63Q9BZJ6 419 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 BTBD1Q9H0C5 482 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 WWP1Q9H0M0 922 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ESRP2Q9H6T0 727 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 NANOGQ9H9S0 305 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ZMAT3Q9HA38 289 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 LRRC4Q9HBW1 653 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ASCL3Q9NQ33 180 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 SERHLQ9NQF3 203 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 BIN3Q9NQY0 253 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ADARB2Q9NS39 739 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 ABCC13Q9NSE7 274 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 PNPLA3Q9NST1 481 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 SETD4Q9NVD3 440 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 DNAJC11Q9NVH1 559 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ELOVL2Q9NXB9 296 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 TAS2R3Q9NYW6 316 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 MORF4L1Q9UBU8 362 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 KLQ9UEF7 1012 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 EPHA6Q9UF33 1036 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 RGS17Q9UGC6 210 aaPredicted RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 NDRG3Q9UGV2 375 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ZNF229Q9UJW7 825 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 NOCTQ9UK39 431 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 MGAT4AQ9UM21 535 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 SHOC2Q9UQ13 582 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 TP53TG5Q9Y2B4 290 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 GPR52Q9Y2T5 361 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 GRIP1Q9Y3R0 1128 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 COPG1Q9Y678 874 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 WNT6Q9Y6F9 365 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ZFP37Q9Y6Q3 630 aaPredicted RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 RNF215Q9Y6U7 377 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 HSPE1-MOB4S4R3N1 261 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 RAPGEF6Q8TEU7 1601 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 MYO5BQ9ULV0 1848 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 CPS1P31327 1500 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ZFYVE16Q7Z3T8 1539 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 MYO3AQ8NEV4 1616 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 MADDQ8WXG6 1647 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ALKQ9UM73 1620 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 SERTM2A0A1B0GWG4 89 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 GNG14A0A1W2PPG7 69 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 XKRY2A2RUG3 117 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 TUBAL3A6NHL2 446 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 FAM47DPA6NHR8 397 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ANKDD1BA6NHY2 528 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ARHGAP42A6NI28 874 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 SAGE2PA6NJ88 616 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 H3BNH8 94 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 QSOX1O00391 747 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 LDLRAD4O15165 306 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 TCAPO15273 167 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 OGTO15294 1046 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PHGDHO43175 533 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 ARHGEF9O43307 516 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 NUDT21O43809 227 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 CALUO43852 315 aaPredicted RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 TSPAN2O60636 221 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 FMO6PO60774 539 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 AVILO75366 819 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 MED6O75586 246 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 SPAG6O75602 509 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 POP7O75817 140 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 TUSC2O75896 110 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 SLC22A5O76082 557 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PDE9AO76083 593 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 RPP14O95059 124 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 KCNK2O95069 426 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PGLSO95336 258 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 H6PDO95479 791 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 BMP15O95972 392 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 OTCP00480 354 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PGK1P00558 417 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 IFNA10P01566 189 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 CRHP06850 196 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 SNRNP70P08621 437 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 CD3GP09693 182 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 OR4E1P0C645 316 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ZDHHC11BP0C7U3 371 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 LINC00614P0C842 121 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 CBSLP0DN79 551 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ODC1P11926 461 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 HSD3B1P14060 373 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ZNF37AP17032 561 aaPredicted RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 SPI1P17947 270 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 HLA-DPA1P20036 260 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 TAC1P20366 129 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 MSH3P20585 1137 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 OGNP20774 298 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 PRPS1L1P21108 318 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 CBLP22681 906 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 GCAP28676 217 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ALDH4A1P30038 563 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ERP29P30040 261 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 CBSP35520 551 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PGM1P36871 562 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 CSKP41240 450 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 CRATP43155 626 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 CRKLP46109 303 aaKnown RBP3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms