RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 FBXO36Q8NEA4 188 aa15.08■□□□□ 0
CLN3-229ENST00000567963 CREB3L4Q8TEY5 395 aa15.08■□□□□ 0
CLN3-229ENST00000567963 THAP3Q8WTV1 239 aaPredicted RBP15.08■□□□□ 0
CLN3-229ENST00000567963 GPR137Q96N19 417 aa15.08■□□□□ 0
CLN3-229ENST00000567963 LRFN1Q9P244 771 aa15.08■□□□□ 0
CLN3-229ENST00000567963 SH3BGRL2Q9UJC5 107 aa15.08■□□□□ 0
CLN3-229ENST00000567963 OARD1Q9Y530 152 aa15.08■□□□□ 0
CLN3-229ENST00000567963 TCRBV16S1A1N1A0A5B0 115 aa15.07■□□□□ 0
CLN3-229ENST00000567963 FAM227AF5H4B4 570 aa15.07■□□□□ 0
CLN3-229ENST00000567963 MLYCDO95822 493 aa15.07■□□□□ 0
CLN3-229ENST00000567963 SP1P08047 785 aa15.07■□□□□ 0
CLN3-229ENST00000567963 MAOAP21397 527 aa15.07■□□□□ 0
CLN3-229ENST00000567963 CASP6P55212 293 aa15.07■□□□□ 0
CLN3-229ENST00000567963 TAS2R39P59534 338 aa15.07■□□□□ 0
CLN3-229ENST00000567963 ALDH6A1Q02252 535 aaKnown RBP15.07■□□□□ 0
CLN3-229ENST00000567963 PDIA2Q13087 525 aaKnown RBP15.07■□□□□ 0
CLN3-229ENST00000567963 FASTKD3Q14CZ7 662 aaKnown RBP15.07■□□□□ 0
CLN3-229ENST00000567963 ZNF468Q5VIY5 522 aaPredicted RBP15.07■□□□□ 0
CLN3-229ENST00000567963 SLC25A25Q6KCM7 469 aa15.07■□□□□ 0
CLN3-229ENST00000567963 GALNTL5Q7Z4T8 443 aa15.07■□□□□ 0
CLN3-229ENST00000567963 CYP4X1Q8N118 509 aa15.07■□□□□ 0
CLN3-229ENST00000567963 ZNF808Q8N4W9 903 aaPredicted RBP15.07■□□□□ 0
CLN3-229ENST00000567963 ANKRD49Q8WVL7 239 aa15.07■□□□□ 0
CLN3-229ENST00000567963 FRMD6Q96NE9 622 aa15.07■□□□□ 0
CLN3-229ENST00000567963 EGFL8Q99944 293 aa15.07■□□□□ 0
CLN3-229ENST00000567963 UNKQ9C0B0 810 aaKnown RBP15.07■□□□□ 0
CLN3-229ENST00000567963 AICDAQ9GZX7 198 aa15.07■□□□□ 0
CLN3-229ENST00000567963 PRDM9Q9NQV7 894 aa15.07■□□□□ 0
CLN3-229ENST00000567963 ZNF835Q9Y2P0 537 aa15.07■□□□□ 0
CLN3-229ENST00000567963 IGKV3D-11A0A0A0MRZ8 115 aa15.06■□□□□ 0
CLN3-229ENST00000567963 SAGE2PA6NJ88 616 aa15.06■□□□□ 0
CLN3-229ENST00000567963 USP27XA6NNY8 438 aa15.06■□□□□ 0
CLN3-229ENST00000567963 C4orf51C9J302 202 aa15.06■□□□□ 0
CLN3-229ENST00000567963 E7ESA3 106 aa15.06■□□□□ 0
CLN3-229ENST00000567963 PSMD12O00232 456 aaPredicted RBP15.06■□□□□ 0
CLN3-229ENST00000567963 RNH1P13489 461 aaKnown RBP15.06■□□□□ 0
CLN3-229ENST00000567963 GRNP28799 593 aaKnown RBP15.06■□□□□ 0
CLN3-229ENST00000567963 TPP2P29144 1249 aaPredicted RBP15.06■□□□□ 0
CLN3-229ENST00000567963 GDF5P43026 501 aa15.06■□□□□ 0
CLN3-229ENST00000567963 RPTNQ6XPR3 784 aa15.06■□□□□ 0
CLN3-229ENST00000567963 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.06■□□□□ 0
CLN3-229ENST00000567963 CEP97Q8IW35 865 aa15.06■□□□□ 0
CLN3-229ENST00000567963 SRRM1Q8IYB3 904 aaKnown RBP15.06■□□□□ 0
CLN3-229ENST00000567963 NFAM1Q8NET5 270 aaPredicted RBP15.06■□□□□ 0
CLN3-229ENST00000567963 RHBDF1Q96CC6 855 aa15.06■□□□□ 0
CLN3-229ENST00000567963 MCMBPQ9BTE3 642 aa15.06■□□□□ 0
CLN3-229ENST00000567963 TRIM31Q9BZY9 425 aa15.06■□□□□ 0
CLN3-229ENST00000567963 GRPEL1Q9HAV7 217 aa15.06■□□□□ 0
CLN3-229ENST00000567963 NECTIN3Q9NQS3 549 aa15.06■□□□□ 0
CLN3-229ENST00000567963 CTNNAL1Q9UBT7 734 aa15.06■□□□□ 0
CLN3-229ENST00000567963 SAR1BQ9Y6B6 198 aa15.06■□□□□ 0
CLN3-229ENST00000567963 EFCAB8A8MWE9 144 aa15.05■□□□□ -0
CLN3-229ENST00000567963 NPIPA5E9PKD4 350 aa15.05■□□□□ -0
CLN3-229ENST00000567963 CCDC188H7C350 402 aa15.05■□□□□ -0
CLN3-229ENST00000567963 C1GALT1C1LP0DN25 315 aa15.05■□□□□ -0
CLN3-229ENST00000567963 GNAZP19086 355 aa15.05■□□□□ -0
CLN3-229ENST00000567963 TNFRSF8P28908 595 aa15.05■□□□□ -0
CLN3-229ENST00000567963 CYB561P49447 251 aa15.05■□□□□ -0
CLN3-229ENST00000567963 MLF1P58340 268 aa15.05■□□□□ -0
CLN3-229ENST00000567963 GNG11P61952 73 aa15.05■□□□□ -0
CLN3-229ENST00000567963 CBLBQ13191 982 aa15.05■□□□□ -0
CLN3-229ENST00000567963 TSNQ15631 228 aaKnown RBP15.05■□□□□ -0
CLN3-229ENST00000567963 C3AR1Q16581 482 aa15.05■□□□□ -0
CLN3-229ENST00000567963 MAPKAPK3Q16644 382 aa15.05■□□□□ -0
CLN3-229ENST00000567963 C18orf21Q32NC0 220 aaPredicted RBP15.05■□□□□ -0
CLN3-229ENST00000567963 TOR1AIP1Q5JTV8 583 aa15.05■□□□□ -0
CLN3-229ENST00000567963 BNC2Q6ZN30 1099 aaPredicted RBP15.05■□□□□ -0
CLN3-229ENST00000567963 Q6ZPB1 254 aaPredicted RBP15.05■□□□□ -0
CLN3-229ENST00000567963 ADAMTSL2Q86TH1 951 aa15.05■□□□□ -0
CLN3-229ENST00000567963 SPPL2CQ8IUH8 684 aa15.05■□□□□ -0
CLN3-229ENST00000567963 CA13Q8N1Q1 262 aa15.05■□□□□ -0
CLN3-229ENST00000567963 FAM98AQ8NCA5 519 aaKnown RBP15.05■□□□□ -0
CLN3-229ENST00000567963 VPS39Q96JC1 886 aa15.05■□□□□ -0
CLN3-229ENST00000567963 TSPAN10Q9H1Z9 355 aaPredicted RBP15.05■□□□□ -0
CLN3-229ENST00000567963 RHBGQ9H310 441 aa15.05■□□□□ -0
CLN3-229ENST00000567963 RHOJQ9H4E5 214 aa15.05■□□□□ -0
CLN3-229ENST00000567963 TRIM45Q9H8W5 580 aaPredicted RBP15.05■□□□□ -0
CLN3-229ENST00000567963 POPDC3Q9HBV1 291 aa15.05■□□□□ -0
CLN3-229ENST00000567963 GPAMQ9HCL2 828 aa15.05■□□□□ -0
CLN3-229ENST00000567963 NSMCE4AQ9NXX6 385 aa15.05■□□□□ -0
CLN3-229ENST00000567963 TINAGQ9UJW2 476 aa15.05■□□□□ -0
CLN3-229ENST00000567963 NPIPA1Q9UND3 350 aa15.05■□□□□ -0
CLN3-229ENST00000567963 APCP25054 2843 aa15.05■□□□□ -0
CLN3-229ENST00000567963 A8MUA0 341 aa15.04■□□□□ -0
CLN3-229ENST00000567963 ASNA1O43681 348 aa15.04■□□□□ -0
CLN3-229ENST00000567963 H2AFYO75367 372 aaKnown RBP15.04■□□□□ -0
CLN3-229ENST00000567963 SLC25A12O75746 678 aa15.04■□□□□ -0
CLN3-229ENST00000567963 WDR47O94967 919 aa15.04■□□□□ -0
CLN3-229ENST00000567963 RPL21P46778 160 aaKnown RBP15.04■□□□□ -0
CLN3-229ENST00000567963 SLC6A12P48065 614 aa15.04■□□□□ -0
CLN3-229ENST00000567963 STXBP1P61764 594 aaKnown RBP15.04■□□□□ -0
CLN3-229ENST00000567963 BTN3A2P78410 334 aa15.04■□□□□ -0
CLN3-229ENST00000567963 XKRXQ6PP77 449 aa15.04■□□□□ -0
CLN3-229ENST00000567963 TMIGD1Q6UXZ0 262 aa15.04■□□□□ -0
CLN3-229ENST00000567963 SLCO4C1Q6ZQN7 724 aa15.04■□□□□ -0
CLN3-229ENST00000567963 FRA10AC1Q70Z53 315 aa15.04■□□□□ -0
CLN3-229ENST00000567963 ZNF227Q86WZ6 799 aa15.04■□□□□ -0
CLN3-229ENST00000567963 SIAH3Q8IW03 269 aa15.04■□□□□ -0
CLN3-229ENST00000567963 MCEMP1Q8IX19 187 aa15.04■□□□□ -0
CLN3-229ENST00000567963 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms