RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 CTNNAL1Q9UBT7 734 aa16.15■□□□□ 0.18
VPS9D1-203ENST00000563798 GABRR3A8MPY1 467 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 B4GALT2O60909 372 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 NEURL1O76050 574 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 C1GALT1C1LP0DN25 315 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 RNH1P13489 461 aaKnown RBP16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 CD46P15529 392 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 SAT1P21673 171 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 GGT5P36269 586 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 RAB8AP61006 207 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 POU4F1Q01851 419 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 RBPJQ06330 500 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 ART3Q13508 389 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 ZNF460Q14592 562 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 TSNQ15631 228 aaKnown RBP16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 KRTCAP3Q53RY4 240 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 MTFR2Q6P444 385 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 RPS19BP1Q86WX3 136 aaKnown RBP16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 TMEM178AQ8NBL3 297 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 TTLQ8NG68 377 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 PDLIM2Q96JY6 352 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 CAPS2Q9BXY5 557 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 TRIM31Q9BZY9 425 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 KLHL31Q9H511 634 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 GPAMQ9HCL2 828 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 SMYD2Q9NRG4 433 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 SNX24Q9Y343 169 aa16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 KLF2Q9Y5W3 355 aaPredicted RBP16.14■□□□□ 0.17
VPS9D1-203ENST00000563798 CACNA1DQ01668 2161 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 SAGE2PA6NJ88 616 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 C4orf51C9J302 202 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 FANCGO15287 622 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 EIF3HO15372 352 aaKnown RBP eCLIP16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 H2AFYO75367 372 aaKnown RBP16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 WISP2O76076 250 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 MLYCDO95822 493 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 EEF1DP29692 281 aaKnown RBP16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 TRHRP34981 398 aaPredicted RBP16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 STXBP1P61764 594 aaKnown RBP16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 BTG2P78543 158 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 PMP22Q01453 160 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 RBBP5Q15291 538 aaKnown RBP16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 TERF2Q15554 542 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 TGFBIQ15582 683 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 SPINK14Q6IE38 97 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 TMIGD1Q6UXZ0 262 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 ZBED8Q8IZ13 594 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 CA13Q8N1Q1 262 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 ITLN2Q8WWU7 325 aaPredicted RBP16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 GAL3ST3Q96A11 431 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 GPR137Q96N19 417 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 FRMD6Q96NE9 622 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 KRT12Q99456 494 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 EGFL8Q99944 293 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 NPLQ9BXD5 320 aaPredicted RBP16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 EHD1Q9H4M9 534 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 CDCP1Q9H5V8 836 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 GPRC5BQ9NZH0 403 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 WHRNQ9P202 907 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 SUCOQ9UBS9 1254 aaKnown RBP16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 PPIEQ9UNP9 301 aaKnown RBP16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 ZNF835Q9Y2P0 537 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 MMACHCQ9Y4U1 282 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 MYO9AB2RTY4 2548 aa16.13■□□□□ 0.17
VPS9D1-203ENST00000563798 TRGV8A0A0C4DH27 118 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 LRIT2A6NDA9 550 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 FAM187AA6NFU0 413 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 PSMD12O00232 456 aaPredicted RBP16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 HNRNPRO43390 633 aaKnown RBP16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 WDR47O94967 919 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 SP1P08047 785 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 HNF4AP41235 474 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 MLF1P58340 268 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 ADPRMQ3LIE5 342 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 TOR1AIP1Q5JTV8 583 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 SP5Q6BEB4 398 aaPredicted RBP16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 SLC25A25Q6KCM7 469 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 RPTNQ6XPR3 784 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 Q6ZPB1 254 aaPredicted RBP16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 FRA10AC1Q70Z53 315 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 SIAH3Q8IW03 269 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 SCUBE1Q8IWY4 988 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 TCAIMQ8N3R3 496 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 PYROXD1Q8WU10 500 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 TSPAN17Q96FV3 270 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 CCDC120Q96HB5 630 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 ERP44Q9BS26 406 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 HES7Q9BYE0 225 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 NECTIN3Q9NQS3 549 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 ANKRD10Q9NXR5 420 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 LRFN1Q9P244 771 aa16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 MTO1Q9Y2Z2 717 aaKnown RBP16.12■□□□□ 0.17
VPS9D1-203ENST00000563798 FAM227AF5H4B4 570 aa16.11■□□□□ 0.17
VPS9D1-203ENST00000563798 CCL21O00585 134 aa16.11■□□□□ 0.17
VPS9D1-203ENST00000563798 TAPBPO15533 448 aa16.11■□□□□ 0.17
VPS9D1-203ENST00000563798 SLC19A2O60779 497 aa16.11■□□□□ 0.17
VPS9D1-203ENST00000563798 CLEC3AO75596 197 aa16.11■□□□□ 0.17
VPS9D1-203ENST00000563798 TBX6O95947 436 aaPredicted RBP16.11■□□□□ 0.17
VPS9D1-203ENST00000563798 C1QAP02745 245 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms