RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 PRDM9Q9NQV7 894 aa15.36■□□□□ 0.05
CLN3-208ENST00000561505 TNFRSF10DQ9UBN6 386 aa15.36■□□□□ 0.05
CLN3-208ENST00000561505 KLF13Q9Y2Y9 288 aaPredicted RBP15.36■□□□□ 0.05
CLN3-208ENST00000561505 NDUFS4O43181 175 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 OR1F1O43749 312 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 AHSGP02765 367 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 TFEBP19484 476 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 PTGS2P35354 604 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 VPS41P49754 854 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 ITGA8P53708 1063 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 CDKN2DP55273 166 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 EMC4Q5J8M3 183 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 MEX3BQ6ZN04 569 aaKnown RBP15.35■□□□□ 0.05
CLN3-208ENST00000561505 SULF2Q8IWU5 870 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 MYO1HQ8N1T3 1032 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 ANKRD53Q8N9V6 530 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.35■□□□□ 0.05
CLN3-208ENST00000561505 CA5BP1Q8WTZ4 195 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 CHTF18Q8WVB6 975 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 ASB5Q8WWX0 329 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 AICDAQ9GZX7 198 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 NECTIN3Q9NQS3 549 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 ITGB1BP2Q9UKP3 347 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 PPT2Q9UMR5 302 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 SPG11Q96JI7 2443 aa15.35■□□□□ 0.05
CLN3-208ENST00000561505 CTAGE15A4D2H0 777 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 KLRC4-KLRK1H3BQV0 150 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 FANCGO15287 622 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 TOXO94900 526 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 B3GALT4O96024 378 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 HIST1H2AGP0C0S8 130 aaPredicted RBP15.34■□□□□ 0.05
CLN3-208ENST00000561505 ZNF888P0CJ79 500 aaPredicted RBP15.34■□□□□ 0.05
CLN3-208ENST00000561505 RNH1P13489 461 aaKnown RBP15.34■□□□□ 0.05
CLN3-208ENST00000561505 HIST1H2ADP20671 130 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 MEOX1P50221 254 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 REEP5Q00765 189 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 BBS9Q3SYG4 887 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 CATSPEREQ5SY80 951 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 RBM20Q5T481 1227 aaKnown RBP15.34■□□□□ 0.05
CLN3-208ENST00000561505 TMEM211Q6ICI0 200 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 C3P1Q6ZMU1 363 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 ABHD13Q7L211 337 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 CTAGE6Q86UF2 777 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 SCUBE1Q8IWY4 988 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 PALM2Q8IXS6 379 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 B3GNT7Q8NFL0 401 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 NEIL2Q969S2 332 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 TMEM125Q96AQ2 219 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 PYCR2Q96C36 320 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 HIST1H2AHQ96KK5 128 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 NDNQ99608 321 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 HIST1H2AJQ99878 128 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 H2AFJQ9BTM1 129 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 NPDC1Q9NQX5 325 aaPredicted RBP15.34■□□□□ 0.05
CLN3-208ENST00000561505 IARS2Q9NSE4 1012 aaKnown RBP15.34■□□□□ 0.05
CLN3-208ENST00000561505 COQ3Q9NZJ6 369 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 ZFATQ9P243 1243 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 ZNF223Q9UK11 482 aaPredicted RBP15.34■□□□□ 0.05
CLN3-208ENST00000561505 MMACHCQ9Y4U1 282 aa15.34■□□□□ 0.05
CLN3-208ENST00000561505 HCFC1P51610 2035 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 A0A1B0GTH9 108 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 TMEM200CA6NKL6 621 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 GOLGA8MH3BSY2 632 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 FCHO1O14526 889 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 B4GALT2O60909 372 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 SERPINA6P08185 405 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 ENO2P09104 434 aaPredicted RBP15.33■□□□□ 0.04
CLN3-208ENST00000561505 MAOAP21397 527 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 CXCR5P32302 372 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 OLR1P78380 273 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 RGS1Q08116 209 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 CRYMQ14894 314 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 PPP1R3AQ16821 1122 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 TBC1D19Q8N5T2 526 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 SPC24Q8NBT2 197 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 TRPV3Q8NET8 790 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 CREB3L4Q8TEY5 395 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 ATL1Q8WXF7 558 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 LINGO1Q96FE5 620 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 DEFB126Q9BYW3 111 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 PELI2Q9HAT8 420 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 PLAC1Q9HBJ0 212 aa15.33■□□□□ 0.04
CLN3-208ENST00000561505 URADA6NGE7 173 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 FOXO6A8MYZ6 492 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 C4orf51C9J302 202 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 PEX1O43933 1283 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 TTC4O95801 387 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 CCDC175P0C221 793 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 PGAM1P18669 254 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 MSX1P28360 303 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 CHRNB4P30926 498 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 CLCN2P51788 898 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 TERF1P54274 439 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 IL2P60568 153 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 CSHL1Q14406 222 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 RNASEH2BQ5TBB1 312 aaKnown RBP15.32■□□□□ 0.04
CLN3-208ENST00000561505 ARHGAP11AQ6P4F7 1023 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 SBSNQ6UWP8 590 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 MDGA2Q7Z553 956 aa15.32■□□□□ 0.04
CLN3-208ENST00000561505 CD163Q86VB7 1156 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms