RNA–Protein interactions for RNA: ENST00000561266.5

TPM1-230, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-230ENST00000561266 CD63P08962 238 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 BTN3A2P78410 334 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 NFATC3Q12968 1075 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 TRAF3Q13114 568 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 HERC3Q15034 1050 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 RASA2Q15283 850 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 DCAF10Q5QP82 559 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 EMBQ6PCB8 327 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 TMEM205Q6UW68 189 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 ZNF793Q6ZN11 406 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 PTRH1Q86Y79 214 aaKnown RBP13.12□□□□□ -0.31
TPM1-230ENST00000561266 C4orf33Q8N1A6 199 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 CA13Q8N1Q1 262 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 TBC1D19Q8N5T2 526 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 L3MBTL4Q8NA19 623 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 TMEM52Q8NDY8 209 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 ZNF483Q8TF39 744 aaPredicted RBP13.12□□□□□ -0.31
TPM1-230ENST00000561266 SORBS1Q9BX66 1292 aaKnown RBP13.12□□□□□ -0.31
TPM1-230ENST00000561266 MS4A8Q9BY19 250 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 PITHD1Q9GZP4 211 aaPredicted RBP13.12□□□□□ -0.31
TPM1-230ENST00000561266 MLXIPLQ9NP71 852 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 PRDM7Q9NQW5 492 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 SEMA3GQ9NS98 782 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 NXT1Q9UKK6 140 aaKnown RBP13.12□□□□□ -0.31
TPM1-230ENST00000561266 MKL2Q9ULH7 1088 aa13.12□□□□□ -0.31
TPM1-230ENST00000561266 SPENQ96T58 3664 aaKnown RBP13.12□□□□□ -0.31
TPM1-230ENST00000561266 IGHV3-20A0A0C4DH32 117 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 ANKDD1BA6NHY2 528 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 SAP18O00422 153 aaKnown RBP13.11□□□□□ -0.31
TPM1-230ENST00000561266 RTCAO00442 366 aaKnown RBP13.11□□□□□ -0.31
TPM1-230ENST00000561266 PRPF4O43172 522 aaKnown RBP eCLIP13.11□□□□□ -0.31
TPM1-230ENST00000561266 ERI3O43414 337 aaKnown RBP13.11□□□□□ -0.31
TPM1-230ENST00000561266 SMIM24O75264 130 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 CDC123O75794 336 aaPredicted RBP13.11□□□□□ -0.31
TPM1-230ENST00000561266 ETHE1O95571 254 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 TGFB1P01137 390 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 PROCP04070 461 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 HEXBP07686 556 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 PCNAP12004 261 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 COX6A1P12074 109 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 CREB1P16220 341 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 NEK2P51955 445 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 HNRNPFP52597 415 aaKnown RBP13.11□□□□□ -0.31
TPM1-230ENST00000561266 PLA2G16P53816 162 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 BTG2P78543 158 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 RHAGQ02094 409 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 EEF1A2Q05639 463 aaKnown RBP13.11□□□□□ -0.31
TPM1-230ENST00000561266 SLC18A2Q05940 514 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 LAPTM5Q13571 262 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 RBBP7Q16576 425 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 CPSF6Q16630 551 aaKnown RBP eCLIP13.11□□□□□ -0.31
TPM1-230ENST00000561266 MED27Q6P2C8 311 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 ABHD17CQ6PCB6 329 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 MED25Q71SY5 747 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 PARP9Q8IXQ6 854 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 MREGQ8N565 214 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 TMEM102Q8N9M5 508 aaPredicted RBP13.11□□□□□ -0.31
TPM1-230ENST00000561266 HUS1BQ8NHY5 278 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 C9orf43Q8TAL5 461 aaPredicted RBP13.11□□□□□ -0.31
TPM1-230ENST00000561266 WDR20Q8TBZ3 569 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 TSLPQ969D9 159 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 TMEM237Q96Q45 408 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 C1QTNF3Q9BXJ4 246 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 SLC25A18Q9H1K4 315 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 OR51B5Q9H339 312 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 ZBTB20Q9HC78 741 aaPredicted RBP13.11□□□□□ -0.31
TPM1-230ENST00000561266 SEMA4BQ9NPR2 832 aaPredicted RBP13.11□□□□□ -0.31
TPM1-230ENST00000561266 C14orf105Q9NVL8 296 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 TUBD1Q9UJT1 453 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 ANGPTL3Q9Y5C1 460 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 CNTRLQ7Z7A1 2325 aa13.11□□□□□ -0.31
TPM1-230ENST00000561266 LOC102723996A0A087X1L8 192 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 TGFBR3LH3BV60 316 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 CDH16O75309 829 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 KRT15P19012 456 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 CERS1P27544 350 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 DDX39BQ13838 428 aaKnown RBP13.1□□□□□ -0.31
TPM1-230ENST00000561266 PCOLCEQ15113 449 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 MINDY4Q4G0A6 757 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 ZNF678Q5SXM1 525 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 LIPJQ5W064 366 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 LETMD1Q6P1Q0 360 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 ABHD13Q7L211 337 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 TRABD2AQ86V40 505 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 MYLK4Q86YV6 388 aaPredicted RBP13.1□□□□□ -0.31
TPM1-230ENST00000561266 TTLQ8NG68 377 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 OR2L5Q8NG80 312 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 GAL3ST3Q96A11 431 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 MTFMTQ96DP5 389 aaKnown RBP13.1□□□□□ -0.31
TPM1-230ENST00000561266 MTERF1Q99551 399 aaKnown RBP13.1□□□□□ -0.31
TPM1-230ENST00000561266 WDR77Q9BQA1 342 aaPredicted RBP13.1□□□□□ -0.31
TPM1-230ENST00000561266 NTMT1Q9BV86 223 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 REXO4Q9GZR2 422 aaKnown RBP13.1□□□□□ -0.31
TPM1-230ENST00000561266 ZNF552Q9H707 407 aaPredicted RBP13.1□□□□□ -0.31
TPM1-230ENST00000561266 ACTR8Q9H981 624 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 ZNF160Q9HCG1 818 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 PLAAQ9Y263 795 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 CLDN16Q9Y5I7 305 aa13.1□□□□□ -0.31
TPM1-230ENST00000561266 TNPO3Q9Y5L0 923 aaKnown RBP13.1□□□□□ -0.31
TPM1-230ENST00000561266 SPTA1P02549 2419 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms