RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 LANCL2Q9NS86 450 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 PSMC3IPQ9P2W1 217 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-219ENST00000555563 FETUBQ9UGM5 382 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 ZNF490Q9ULM2 529 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-219ENST00000555563 PCDHGB7Q9Y5F8 929 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 CFAP46Q8IYW2 2715 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 A0A0G2JN53 185 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 LRIT2A6NDA9 550 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 ANKDD1BA6NHY2 528 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 E2F3O00716 465 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 ERI3O43414 337 aaKnown RBP12.94□□□□□ -0.34
SHMT2-219ENST00000555563 CHST10O43529 356 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 WFS1O76024 890 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 CYC1P08574 325 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 RBP1P09455 135 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 COL6A2P12110 1019 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 EPB42P16452 691 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 CASP2P42575 452 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 CD97P48960 835 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 TLE1Q04724 770 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 PCDH1Q08174 1060 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 LAPTM5Q13571 262 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 PCOLCEQ15113 449 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 PCBP2Q15366 365 aaKnown RBP eCLIP12.94□□□□□ -0.34
SHMT2-219ENST00000555563 ADPRMQ3LIE5 342 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 LGSNQ5TDP6 509 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 GRHL2Q6ISB3 625 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 TIFABQ6ZNK6 161 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 NDUFAF7Q7L592 441 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 GOLGA7Q7Z5G4 137 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 UBLCP1Q8WVY7 318 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-219ENST00000555563 TBC1D20Q96BZ9 403 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 ZNF700Q9H0M5 742 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 RHBGQ9H310 441 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 RIC8BQ9NVN3 520 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 ANGPTL3Q9Y5C1 460 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 SPTA1P02549 2419 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 BSNQ9UPA5 3926 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 BOD1L1Q8NFC6 3051 aa12.94□□□□□ -0.34
SHMT2-219ENST00000555563 TENM4Q6N022 2769 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 IGHV3-20A0A0C4DH32 117 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 IQANK1A0A1B0GTG1 560 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 CYSRT1A8MQ03 144 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 DPM1O60762 260 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 WISP1O95388 367 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 SHBGP04278 402 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 FHP07954 510 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 CELA2AP08217 269 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 PCNAP12004 261 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 IL10P22301 178 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 JAK1P23458 1154 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 EEF1DP29692 281 aaKnown RBP12.93□□□□□ -0.34
SHMT2-219ENST00000555563 PLA2G16P53816 162 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 BTN3A2P78410 334 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 RHAGQ02094 409 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 GTF2H2Q13888 395 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 ABRAXAS2Q15018 415 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 HIST2H2ACQ16777 129 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-219ENST00000555563 IRAK1BP1Q5VVH5 260 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 HIST2H2AA3Q6FI13 130 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 GTF2H2CQ6P1K8 395 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 MED27Q6P2C8 311 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 TRIM40Q6P9F5 258 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 MYLK4Q86YV6 388 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-219ENST00000555563 HPS6Q86YV9 775 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 LAS2Q8IYD9 372 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 RBMXL3Q8N7X1 1067 aaKnown RBP12.93□□□□□ -0.34
SHMT2-219ENST00000555563 MZB1Q8WU39 189 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 METTL21AQ8WXB1 218 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 TSLPQ969D9 159 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 PHF21BQ96EK2 531 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 THOC3Q96J01 351 aaKnown RBP12.93□□□□□ -0.34
SHMT2-219ENST00000555563 QRFPRQ96P65 431 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 MRPL57Q9BQC6 102 aaKnown RBP12.93□□□□□ -0.34
SHMT2-219ENST00000555563 REXO4Q9GZR2 422 aaKnown RBP12.93□□□□□ -0.34
SHMT2-219ENST00000555563 LHPPQ9H008 270 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 MRPL46Q9H2W6 279 aaKnown RBP12.93□□□□□ -0.34
SHMT2-219ENST00000555563 ACTR8Q9H981 624 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 C5AR2Q9P296 337 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 C19orf25Q9UFG5 118 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-219ENST00000555563 TBK1Q9UHD2 729 aa12.93□□□□□ -0.34
SHMT2-219ENST00000555563 TNPO3Q9Y5L0 923 aaKnown RBP12.93□□□□□ -0.34
SHMT2-219ENST00000555563 MAGEB17A8MXT2 336 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 ESPNB1AK53 854 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 STX16-NPEPL1H3BU86 382 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 GOLGA8RI6L899 631 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 STX16O14662 325 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 KLHL41O60662 606 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 B4GALT2O60909 372 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 SMIM24O75264 130 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 SEC24DO94855 1032 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-219ENST00000555563 SBK3P0C264 359 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 PRR35P0CG20 571 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 RNH1P13489 461 aaKnown RBP12.92□□□□□ -0.34
SHMT2-219ENST00000555563 CERS1P27544 350 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 HPDP32754 393 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-219ENST00000555563 PIK3CGP48736 1102 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 VSNL1P62760 191 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 SLC6A19Q695T7 634 aa12.92□□□□□ -0.34
SHMT2-219ENST00000555563 METTL2BQ6P1Q9 378 aaKnown RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms