RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 DEFB134Q4QY38 66 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 ZNF385CQ66K41 422 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-209ENST00000553949 PRMT9Q6P2P2 845 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 TRIM40Q6P9F5 258 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 ABHD17CQ6PCB6 329 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 C6orf15Q6UXA7 325 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-209ENST00000553949 PRSS41Q7RTY9 318 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 UBE3DQ7Z6J8 389 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 ZFAND4Q86XD8 727 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 PDSS2Q86YH6 399 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 CRLF3Q8IUI8 442 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 DDIASQ8IXT1 998 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 DSELQ8IZU8 1212 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 SRFBP1Q8NEF9 429 aaKnown RBP11.62□□□□□ -0.55
SHMT2-209ENST00000553949 OR9A4Q8NGU2 314 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 RGMAQ96B86 450 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 FAR2Q96K12 515 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 C7orf26Q96N11 449 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 KCNC2Q96PR1 638 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 C17orf62Q9BQA9 187 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 ACPTQ9BZG2 426 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 SLCO1B3Q9NPD5 702 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 NMRK1Q9NWW6 199 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 VPS29Q9UBQ0 182 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 ACSL6Q9UKU0 697 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 CDC14AQ9UNH5 594 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 NAALAD2Q9Y3Q0 740 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 PTGDR2Q9Y5Y4 395 aa11.62□□□□□ -0.55
SHMT2-209ENST00000553949 A0A0G2JN53 185 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 TCP11X1B4DZS4 312 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-209ENST00000553949 H0YIG0 161 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 SGK494L7N484 410 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 SLC28A1O00337 649 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 RTCAO00442 366 aaKnown RBP11.61□□□□□ -0.55
SHMT2-209ENST00000553949 PLPP1O14494 284 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 PIP5K1BO14986 540 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 RAD1O60671 282 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 SKAP2O75563 359 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-209ENST00000553949 KLHL18O94889 574 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 NSA2O95478 260 aaKnown RBP11.61□□□□□ -0.55
SHMT2-209ENST00000553949 KLK3P07288 261 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-209ENST00000553949 CCNYL3P0C7X3 344 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 LINC00032P0C843 101 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 AGXTP21549 392 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 OR1D4P47884 311 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 RAP1GDS1P52306 607 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 ARFIP1P53367 373 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 SKP1P63208 163 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 BTN3A2P78410 334 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 DCDP81605 110 aaKnown RBP11.61□□□□□ -0.55
SHMT2-209ENST00000553949 ABHD18Q0P651 414 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 TBL3Q12788 808 aaKnown RBP11.61□□□□□ -0.55
SHMT2-209ENST00000553949 PDCD2Q16342 344 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-209ENST00000553949 IMPG1Q17R60 797 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 NIPAL1Q6NVV3 410 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 TIPARPQ7Z3E1 657 aaKnown RBP11.61□□□□□ -0.55
SHMT2-209ENST00000553949 NLGN4XQ8N0W4 816 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 ESX1Q8N693 406 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 NLGN4YQ8NFZ3 816 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-209ENST00000553949 MR1Q95460 341 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 COL26A1Q96A83 441 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 MMABQ96EY8 250 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-209ENST00000553949 CCT7Q99832 543 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 DPH2Q9BQC3 489 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-209ENST00000553949 TBCDQ9BTW9 1192 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 SORBS1Q9BX66 1292 aaKnown RBP11.61□□□□□ -0.55
SHMT2-209ENST00000553949 LHX9Q9NQ69 397 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 PRDM7Q9NQW5 492 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 AHSPQ9NZD4 102 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 MARCOQ9UEW3 520 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-209ENST00000553949 PADI1Q9ULC6 663 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 CCL27Q9Y4X3 112 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 MAU2Q9Y6X3 613 aa11.61□□□□□ -0.55
SHMT2-209ENST00000553949 CACNA1AO00555 2505 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 A0A088AWK7 358 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 ZNF860A6NHJ4 632 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 SLCO1B7G3V0H7 640 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 RGS14O43566 566 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 RDH16O75452 317 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 RSL1D1O76021 490 aaKnown RBP11.6□□□□□ -0.55
SHMT2-209ENST00000553949 ONECUT2O95948 504 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 JUNP05412 331 aaKnown RBP11.6□□□□□ -0.55
SHMT2-209ENST00000553949 ATXN8OSP0DMR3 200 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 KITP10721 976 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 ZNF10P21506 573 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-209ENST00000553949 FBLP22087 321 aaKnown RBP11.6□□□□□ -0.55
SHMT2-209ENST00000553949 HIST1H1TP22492 207 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-209ENST00000553949 ATP5A1P25705 553 aaKnown RBP11.6□□□□□ -0.55
SHMT2-209ENST00000553949 TSFMP43897 325 aaKnown RBP11.6□□□□□ -0.55
SHMT2-209ENST00000553949 MTTPP55157 894 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 BTKQ06187 659 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 DSG2Q14126 1118 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 AP5B1Q2VPB7 878 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 NKAIN1Q4KMZ8 207 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 XKR7Q5GH72 579 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 SPDYAQ5MJ70 313 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 ARHGAP40Q5TG30 622 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 OR4C11Q6IEV9 310 aa11.6□□□□□ -0.55
SHMT2-209ENST00000553949 LCN10Q6JVE6 187 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms