RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 MKI67P46013 3256 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 E7EQ34 232 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 IDH3BO43837 385 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 GREM1O60565 184 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 PRMT3O60678 531 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 RECKO95980 971 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CBSLP0DN79 551 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 LHCGRP22888 699 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CBSP35520 551 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 NSG1P42857 185 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 OR2B6P58173 313 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 OLR1P78380 273 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 SPIBQ01892 262 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 TEKQ02763 1124 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 BCL2L1Q07817 233 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 GPR50Q13585 617 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 EIF4HQ15056 248 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 MED22Q15528 200 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 BAK1Q16611 211 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 MICAQ29983 383 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 GPR33Q49SQ1 333 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CCSMST1Q4G0I0 132 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 TOR1AIP1Q5JTV8 583 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF605Q86T29 641 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 BBS7Q8IWZ6 715 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 FAM217AQ8IXS0 508 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 OR4K1Q8NGD4 311 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 LILRB4Q8NHJ6 448 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 VANGL1Q8TAA9 524 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CSGALNACT1Q8TDX6 532 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ADAMTS19Q8TE59 1207 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 GTPBP3Q969Y2 492 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CRELD1Q96HD1 420 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 DMRTB1Q96MA1 342 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 MGLLQ99685 303 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 SPATA9Q9BWV2 254 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 TAPBPLQ9BX59 468 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 RSPO3Q9BXY4 272 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 NDEL1Q9GZM8 345 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 DNAJC11Q9NVH1 559 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 VPS29Q9UBQ0 182 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CLEC2DQ9UHP7 191 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ACSL6Q9UKU0 697 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 KIAA1671Q9BY89 1806 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 PRAMEF33A0A0G2JMD5 474 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 LINC00854A0A1B0GVQ3 168 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 TMEM202A6NGA9 273 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 LOC110117498-PIK3R3F6TDL0 507 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 WWP2O00308 870 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 PLK4O00444 970 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 SCAMP2O15127 329 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CAPN5O15484 640 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 NDUFB5O43674 189 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 PRAMEF10O60809 474 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 TNFRSF21O75509 655 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 MFN2O95140 757 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CELF2O95319 508 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 KRT8P05787 483 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 IGFBP1P08833 259 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 IDSP22304 550 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 AZGP1P25311 298 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CCND3P30281 292 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 PCGF2P35227 344 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 SOX6P35712 828 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 RPS19P39019 145 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 SOX3P41225 446 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 SLC15A1P46059 708 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 AP1S1P61966 158 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CAP1Q01518 475 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 PTSQ03393 145 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 DMPKQ09013 629 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 SMARCB1Q12824 385 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 DOC2AQ14183 400 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 PTGES3Q15185 160 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF79Q15937 498 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 PRSS53Q2L4Q9 553 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 Q5BKY6 102 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 DGKKQ5KSL6 1271 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 SPANXN2Q5MJ10 180 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 KLHL17Q6TDP4 642 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF783Q6ZMS7 281 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 PRR23CQ6ZRP0 262 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 DEPDC4Q8N2C3 294 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 C1orf52Q8N6N3 182 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 PAF1Q8N7H5 531 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 LMNTD1Q8N9Z9 388 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 DENND6BQ8NEG7 585 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 GPR156Q8NFN8 814 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ASB15Q8WXK1 588 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 PIK3R3Q92569 461 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CASD1Q96PB1 797 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 OPALINQ96PE5 141 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 OR4K3Q96R72 315 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 TSEN34Q9BSV6 310 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 OR2B2Q9GZK3 357 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 HHATLQ9HCP6 504 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ACER3Q9NUN7 267 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 SPATA6Q9NWH7 488 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ADPRHL2Q9NX46 363 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ZDHHC3Q9NYG2 299 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms