RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 NDNQ99608 321 aa12.05□□□□□ -0.48
PTCH1-218ENST00000548945 NAT9Q9BTE0 207 aa12.05□□□□□ -0.48
PTCH1-218ENST00000548945 RBCK1Q9BYM8 510 aa12.05□□□□□ -0.48
PTCH1-218ENST00000548945 TRIM54Q9BYV2 358 aa12.05□□□□□ -0.48
PTCH1-218ENST00000548945 ARL15Q9NXU5 204 aa12.05□□□□□ -0.48
PTCH1-218ENST00000548945 ZFP69BQ9UJL9 534 aa12.05□□□□□ -0.48
PTCH1-218ENST00000548945 ASB1Q9Y576 335 aa12.05□□□□□ -0.48
PTCH1-218ENST00000548945 TCRBV16S1A1N1A0A5B0 115 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 SAGE2PA6NJ88 616 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 C19orf84I3L1E1 186 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 FCHO1O14526 889 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 ENO2P09104 434 aaPredicted RBP12.04□□□□□ -0.48
PTCH1-218ENST00000548945 ZNF888P0CJ79 500 aaPredicted RBP12.04□□□□□ -0.48
PTCH1-218ENST00000548945 GABRB3P28472 473 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 KIR3DL1P43629 444 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 SCTRP47872 440 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 HLCSP50747 726 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 CDKN2DP55273 166 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 CDSNQ15517 529 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 ZNF468Q5VIY5 522 aaPredicted RBP12.04□□□□□ -0.48
PTCH1-218ENST00000548945 ZNF227Q86WZ6 799 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 GPATCH11Q8N954 259 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 GRK7Q8WTQ7 553 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 ALKBH8Q96BT7 664 aaKnown RBP12.04□□□□□ -0.48
PTCH1-218ENST00000548945 PTCHD1Q96NR3 888 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 OR4K3Q96R72 315 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 TREX2Q9BQ50 279 aaPredicted RBP12.04□□□□□ -0.48
PTCH1-218ENST00000548945 ENKD1Q9H0I2 346 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 PRDM9Q9NQV7 894 aa12.04□□□□□ -0.48
PTCH1-218ENST00000548945 TRMT1Q9NXH9 659 aaKnown RBP12.04□□□□□ -0.48
PTCH1-218ENST00000548945 CORO1CQ9ULV4 474 aaPredicted RBP12.04□□□□□ -0.48
PTCH1-218ENST00000548945 KLF13Q9Y2Y9 288 aaPredicted RBP12.04□□□□□ -0.48
PTCH1-218ENST00000548945 IGKV3D-11A0A0A0MRZ8 115 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 USP27XA6NNY8 438 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 ADAM10O14672 748 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 B4GALT2O60909 372 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 AHSGP02765 367 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 RNH1P13489 461 aaKnown RBP12.03□□□□□ -0.48
PTCH1-218ENST00000548945 FNTAP49354 379 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 CSHL1Q14406 222 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 TERF2Q15554 542 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 RNFT1Q5M7Z0 435 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 SPANXN3Q5MJ09 141 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 RBM20Q5T481 1227 aaKnown RBP12.03□□□□□ -0.48
PTCH1-218ENST00000548945 RNASEH2BQ5TBB1 312 aaKnown RBP12.03□□□□□ -0.48
PTCH1-218ENST00000548945 CEP97Q8IW35 865 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 CYP4X1Q8N118 509 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 KIF2BQ8N4N8 673 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 CPSF7Q8N684 471 aaKnown RBP12.03□□□□□ -0.48
PTCH1-218ENST00000548945 ARMC2Q8NEN0 867 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 NFAM1Q8NET5 270 aaPredicted RBP12.03□□□□□ -0.48
PTCH1-218ENST00000548945 TRPV3Q8NET8 790 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 UTP15Q8TED0 518 aaKnown RBP12.03□□□□□ -0.48
PTCH1-218ENST00000548945 CHTF18Q8WVB6 975 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 SLC5A11Q8WWX8 675 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 NEIL2Q969S2 332 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 PYCR2Q96C36 320 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 PDLIM5Q96HC4 596 aaKnown RBP12.03□□□□□ -0.48
PTCH1-218ENST00000548945 DEFB126Q9BYW3 111 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 SLC6A16Q9GZN6 736 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 PELI2Q9HAT8 420 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 JRKLQ9Y4A0 524 aa12.03□□□□□ -0.48
PTCH1-218ENST00000548945 ANKHD1Q8IWZ3 2542 aaKnown RBP12.02□□□□□ -0.48
PTCH1-218ENST00000548945 KLRC4-KLRK1H3BQV0 150 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 KIF2AO00139 706 aaPredicted RBP12.02□□□□□ -0.49
PTCH1-218ENST00000548945 PSMD12O00232 456 aaPredicted RBP12.02□□□□□ -0.49
PTCH1-218ENST00000548945 PGRMC1O00264 195 aaKnown RBP12.02□□□□□ -0.49
PTCH1-218ENST00000548945 DNAJB6O75190 326 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 SERPIND1P05546 499 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 SERPINA6P08185 405 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 SMIM10L1P0DMW3 83 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 ST13P50502 369 aaKnown RBP12.02□□□□□ -0.49
PTCH1-218ENST00000548945 ITGA8P53708 1063 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 OLR1P78380 273 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 REEP5Q00765 189 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 PDAP1Q13442 181 aaKnown RBP12.02□□□□□ -0.49
PTCH1-218ENST00000548945 BBS9Q3SYG4 887 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 CATSPEREQ5SY80 951 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 FGD2Q7Z6J4 655 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 C16orf52Q8NHV5 167 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 FAM57AQ8TBR7 257 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 CA5BP1Q8WTZ4 195 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 SMIM10Q96HG1 83 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 AIF1LQ9BQI0 150 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 MCCC2Q9HCC0 563 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 COQ3Q9NZJ6 369 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 PPIEQ9UNP9 301 aaKnown RBP12.02□□□□□ -0.49
PTCH1-218ENST00000548945 MMACHCQ9Y4U1 282 aa12.02□□□□□ -0.49
PTCH1-218ENST00000548945 SYNDIG1LA6NDD5 238 aa12.01□□□□□ -0.49
PTCH1-218ENST00000548945 TFECO14948 347 aaPredicted RBP12.01□□□□□ -0.49
PTCH1-218ENST00000548945 FANCGO15287 622 aa12.01□□□□□ -0.49
PTCH1-218ENST00000548945 TUBB4AP04350 444 aa12.01□□□□□ -0.49
PTCH1-218ENST00000548945 MAOAP21397 527 aa12.01□□□□□ -0.49
PTCH1-218ENST00000548945 PTGER1P34995 402 aa12.01□□□□□ -0.49
PTCH1-218ENST00000548945 PTGS2P35354 604 aa12.01□□□□□ -0.49
PTCH1-218ENST00000548945 MEOX1P50221 254 aa12.01□□□□□ -0.49
PTCH1-218ENST00000548945 CLCN2P51788 898 aa12.01□□□□□ -0.49
PTCH1-218ENST00000548945 BTG2P78543 158 aa12.01□□□□□ -0.49
PTCH1-218ENST00000548945 HSF1Q00613 529 aa12.01□□□□□ -0.49
PTCH1-218ENST00000548945 HYAL2Q12891 473 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms