RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 CCDC58Q4VC31 144 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 SHQ1Q6PI26 577 aaKnown RBP14.1□□□□□ -0.15
HOXC11-202ENST00000546378 TMPRSS11AQ6ZMR5 421 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 RBM45Q8IUH3 476 aaKnown RBP14.1□□□□□ -0.15
HOXC11-202ENST00000546378 CCDC117Q8IWD4 279 aaPredicted RBP14.1□□□□□ -0.15
HOXC11-202ENST00000546378 DPP10Q8N608 796 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 TCEANCQ8N8B7 351 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 ENKURQ8TC29 256 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 TM9SF2Q99805 663 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 CPPED1Q9BRF8 314 aaPredicted RBP14.1□□□□□ -0.15
HOXC11-202ENST00000546378 IFT52Q9Y366 437 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 AKR7A2O43488 359 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 CCNDBP1O95273 360 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 HLA-EP13747 358 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 HNRNPA0Q13151 305 aaKnown RBP14.1□□□□□ -0.15
HOXC11-202ENST00000546378 C5orf22Q49AR2 442 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 CLMPQ9H6B4 373 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 GORASP2Q9H8Y8 452 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 NPIPB15A6NHN6 443 aaPredicted RBP14.1□□□□□ -0.15
HOXC11-202ENST00000546378 KCNK5O95279 499 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 ETHE1O95571 254 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 CBLBQ13191 982 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 C10orf62Q5T681 223 aaPredicted RBP14.1□□□□□ -0.15
HOXC11-202ENST00000546378 MACROD1Q9BQ69 325 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 HOXD1Q9GZZ0 328 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 BRD9Q9H8M2 597 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 NECTIN3Q9NQS3 549 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 IL17CQ9P0M4 197 aa14.1□□□□□ -0.15
HOXC11-202ENST00000546378 MAP1BP46821 2468 aaKnown RBP14.1□□□□□ -0.15
HOXC11-202ENST00000546378 OR2A25A4D2G3 310 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 FRS3O43559 492 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 TLX2O43763 284 aaPredicted RBP14.09□□□□□ -0.15
HOXC11-202ENST00000546378 HTR2BP41595 481 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 YBEYP58557 167 aaPredicted RBP14.09□□□□□ -0.15
HOXC11-202ENST00000546378 MAP4K2Q12851 820 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 MAD2L1Q13257 205 aaPredicted RBP14.09□□□□□ -0.15
HOXC11-202ENST00000546378 OR2G6Q5TZ20 316 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 FRG2Q64ET8 278 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 BRAT1Q6PJG6 821 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 FBXO22Q8NEZ5 403 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 MYDGFQ969H8 173 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 YIPF6Q96EC8 236 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 SAMD11Q96NU1 681 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 FRG2BQ96QU4 278 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 ATP6V1HQ9UI12 483 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 VPS9D1Q9Y2B5 631 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 F5P12259 2224 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 C5orf58C9J3I9 102 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 RGS6P49758 472 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 HECTD3Q5T447 861 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 SNX20Q7Z614 316 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 RAB43Q86YS6 212 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 ASCC1Q8N9N2 400 aaKnown RBP14.09□□□□□ -0.15
HOXC11-202ENST00000546378 ZNF740Q8NDX6 193 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 POF1BQ8WVV4 589 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 APH1BQ8WW43 257 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 IL17FQ96PD4 163 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 SLC30A2Q9BRI3 323 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 SERHLQ9NQF3 203 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 ZNF639Q9UID6 485 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 RPS6KA6Q9UK32 745 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 NEUROG3Q9Y4Z2 214 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 LYVE1Q9Y5Y7 322 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 THSD7BQ9C0I4 1608 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 A0A1W2PPK0 400 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 SLC38A8A6NNN8 435 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 HOXA2O43364 376 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 ERN1O75460 977 aaKnown RBP14.09□□□□□ -0.15
HOXC11-202ENST00000546378 TOXO94900 526 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 OAZ2O95190 189 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 WISP3O95389 354 aaPredicted RBP14.09□□□□□ -0.15
HOXC11-202ENST00000546378 RPS19P39019 145 aaKnown RBP14.09□□□□□ -0.15
HOXC11-202ENST00000546378 RPS13P62277 151 aaKnown RBP14.09□□□□□ -0.15
HOXC11-202ENST00000546378 ZNF33AQ06730 810 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 TTLL9Q3SXZ7 439 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 WDR53Q7Z5U6 358 aaPredicted RBP14.09□□□□□ -0.15
HOXC11-202ENST00000546378 LRRC49Q8IUZ0 686 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 CMTM8Q8IZV2 173 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 C17orf50Q8WW18 174 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 TRIB3Q96RU7 358 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 WRAP53Q9BUR4 548 aaKnown RBP14.09□□□□□ -0.15
HOXC11-202ENST00000546378 MRPL9Q9BYD2 267 aaKnown RBP14.09□□□□□ -0.15
HOXC11-202ENST00000546378 C11orf49Q9H6J7 331 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 TM9SF3Q9HD45 589 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 NKIRAS2Q9NYR9 191 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 HSPB11Q9Y547 144 aa14.09□□□□□ -0.15
HOXC11-202ENST00000546378 SPIN1Q9Y657 262 aaPredicted RBP14.09□□□□□ -0.15
HOXC11-202ENST00000546378 NYNRINQ9P2P1 1898 aaKnown RBP14.08□□□□□ -0.15
HOXC11-202ENST00000546378 CCDC182A6NF36 153 aa14.08□□□□□ -0.16
HOXC11-202ENST00000546378 PLD2O14939 933 aa14.08□□□□□ -0.16
HOXC11-202ENST00000546378 C7P10643 843 aa14.08□□□□□ -0.16
HOXC11-202ENST00000546378 DNAJB1P25685 340 aa14.08□□□□□ -0.16
HOXC11-202ENST00000546378 TGFBR2P37173 567 aa14.08□□□□□ -0.16
HOXC11-202ENST00000546378 Q6ZVL8 140 aa14.08□□□□□ -0.16
HOXC11-202ENST00000546378 LHFPL3Q86UP9 236 aa14.08□□□□□ -0.16
HOXC11-202ENST00000546378 MMAAQ8IVH4 418 aaKnown RBP14.08□□□□□ -0.16
HOXC11-202ENST00000546378 FAM20CQ8IXL6 584 aa14.08□□□□□ -0.16
HOXC11-202ENST00000546378 KBTBD8Q8NFY9 601 aa14.08□□□□□ -0.16
HOXC11-202ENST00000546378 OR6C4Q8NGE1 309 aa14.08□□□□□ -0.16
HOXC11-202ENST00000546378 MGME1Q9BQP7 344 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms