RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 HOMEZQ8IX15 550 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 SYTL1Q8IYJ3 562 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 CLIP4Q8N3C7 705 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 POC5Q8NA72 575 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 MYDGFQ969H8 173 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 CCM2Q9BSQ5 444 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 CDADC1Q9BWV3 514 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 MS4A12Q9NXJ0 267 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 ITM2BQ9Y287 266 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 TRAV19A0A0A6YYK7 116 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 PRAMEF33A0A0G2JMD5 474 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 AGAP5A6NIR3 686 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 PRAMEF10O60809 474 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 TNFRSF21O75509 655 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 UPK1BO75841 260 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 ADORA3P0DMS8 318 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 TPTEP56180 551 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 POLR2LP62875 67 aaKnown RBP15.16■□□□□ 0.02
LDLR-204ENST00000545707 SLC5A12Q1EHB4 618 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 MICAQ29983 383 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 ZDHHC20Q5W0Z9 365 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 TMEM220Q6QAJ8 160 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 COMMD6Q7Z4G1 85 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 ARMC8Q8IUR7 673 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 OR4C15Q8NGM1 316 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 SORBS1Q9BX66 1292 aaKnown RBP15.16■□□□□ 0.02
LDLR-204ENST00000545707 SPNS1Q9H2V7 528 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 PCDHGA4Q9Y5G9 962 aa15.16■□□□□ 0.02
LDLR-204ENST00000545707 ADAMDEC1O15204 470 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 CATP04040 527 aaKnown RBP15.15■□□□□ 0.02
LDLR-204ENST00000545707 PABPC1P11940 636 aaKnown RBP15.15■□□□□ 0.02
LDLR-204ENST00000545707 VIPR1P32241 457 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 C21orf58P58505 322 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 SELENBP1Q13228 472 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 KCNC3Q14003 757 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 STARD3Q14849 445 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 TBCEQ15813 527 aaPredicted RBP15.15■□□□□ 0.02
LDLR-204ENST00000545707 IFI44LQ53G44 452 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 SLCO4C1Q6ZQN7 724 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 NEK10Q6ZWH5 1172 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 C2orf73Q8N5S3 287 aaPredicted RBP15.15■□□□□ 0.02
LDLR-204ENST00000545707 ZNF740Q8NDX6 193 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 ZNF480Q8WV37 535 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 OR5M11Q96RB7 305 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 EMILIN2Q9BXX0 1053 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 BRF2Q9HAW0 419 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 ZNF282Q9UDV7 671 aaPredicted RBP15.15■□□□□ 0.02
LDLR-204ENST00000545707 RAB23Q9ULC3 237 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 OGDHLQ9ULD0 1010 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 MRPS14O60783 128 aaKnown RBP15.15■□□□□ 0.02
LDLR-204ENST00000545707 TIMP2P16035 220 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 POU1F1P28069 291 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 RECQLP46063 649 aaPredicted RBP15.15■□□□□ 0.02
LDLR-204ENST00000545707 C2orf80Q0P641 193 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 TMEM115Q12893 351 aaPredicted RBP15.15■□□□□ 0.02
LDLR-204ENST00000545707 SLBPQ14493 270 aaKnown RBP eCLIP15.15■□□□□ 0.02
LDLR-204ENST00000545707 TEAD4Q15561 434 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 TPRG1LQ5T0D9 272 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 HENMT1Q5T8I9 393 aaKnown RBP15.15■□□□□ 0.02
LDLR-204ENST00000545707 UTS2BQ765I0 119 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 CACTIN-AS1Q8N1I8 211 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 KIAA1958Q8N8K9 716 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 MINDY2Q8NBR6 621 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 B3GNT7Q8NFL0 401 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 MMP27Q9H306 513 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 REEP4Q9H6H4 257 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 PLCXD1Q9NUJ7 323 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 IMPAD1Q9NX62 359 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 SPG21Q9NZD8 308 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 GULP1Q9UBP9 304 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 DUSP12Q9UNI6 340 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 KCNE2Q9Y6J6 123 aa15.15■□□□□ 0.02
LDLR-204ENST00000545707 RNASET2O00584 256 aaKnown RBP15.14■□□□□ 0.01
LDLR-204ENST00000545707 DLGAP3O95886 979 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 LRG1P02750 347 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 CXCL10P02778 98 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 CTSLP07711 333 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 GABRB1P18505 474 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 PPIBP23284 216 aaKnown RBP15.14■□□□□ 0.01
LDLR-204ENST00000545707 HOXD10P28358 340 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 SERPINB1P30740 379 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 SOAT1P35610 550 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 TAS2R50P59544 299 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 TBPL1P62380 186 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 GRIN2CQ14957 1233 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 SPIN4Q56A73 249 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 GCNT6Q5T4J0 391 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 MED27Q6P2C8 311 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 ADIPOR2Q86V24 386 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 HEATR4Q86WZ0 1026 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 OR56A3Q8NH54 315 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 BTN2A2Q8WVV5 523 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 ATL1Q8WXF7 558 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 TCEAL4Q96EI5 215 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 MAGEB10Q96LZ2 347 aaPredicted RBP15.14■□□□□ 0.01
LDLR-204ENST00000545707 FAM129BQ96TA1 746 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 NRTNQ99748 197 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 POU2F3Q9UKI9 436 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 CFAP20Q9Y6A4 193 aaKnown RBP15.14■□□□□ 0.01
LDLR-204ENST00000545707 SLC5A10A0PJK1 596 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms