RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 FNTAP49354 379 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 CCR8P51685 355 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 OR4D2P58180 307 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 BTG2P78543 158 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 ADORA2A-AS1P86434 159 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 USP10Q14694 798 aaKnown RBP7.95□□□□□ -1.14
USP28-215ENST00000545608 ABRAXAS2Q15018 415 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 PPP1R7Q15435 360 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 OR1C1Q15619 314 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 EXT1Q16394 746 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 BBS9Q3SYG4 887 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 DEFB134Q4QY38 66 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 SPANXN3Q5MJ09 141 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 HP1BP3Q5SSJ5 553 aaPredicted RBP7.95□□□□□ -1.14
USP28-215ENST00000545608 TEDDM1Q5T9Z0 273 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 HECTD2Q5U5R9 776 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 ZNF468Q5VIY5 522 aaPredicted RBP7.95□□□□□ -1.14
USP28-215ENST00000545608 CNTN4Q8IWV2 1026 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 MCEMP1Q8IX19 187 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 SLC35F6Q8N357 371 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 KIF2BQ8N4N8 673 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 ZNF808Q8N4W9 903 aaPredicted RBP7.95□□□□□ -1.14
USP28-215ENST00000545608 ACTRT1Q8TDG2 376 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 GRK7Q8WTQ7 553 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 TBC1D20Q96BZ9 403 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 FBXL8Q96CD0 374 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 CERS2Q96G23 380 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 SCMH1Q96GD3 660 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 PWWP2AQ96N64 755 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 OR1F2PQ96R84 312 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 OSBPL9Q96SU4 736 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 NAP1L3Q99457 506 aaPredicted RBP7.95□□□□□ -1.14
USP28-215ENST00000545608 LPAR4Q99677 370 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 OLFM1Q99784 485 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 UTP23Q9BRU9 249 aaKnown RBP7.95□□□□□ -1.14
USP28-215ENST00000545608 HAUS8Q9BT25 410 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 SARGQ9BW04 601 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 FAM129AQ9BZQ8 928 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 CDCP1Q9H5V8 836 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 ARL15Q9NXU5 204 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 SUCOQ9UBS9 1254 aaKnown RBP7.95□□□□□ -1.14
USP28-215ENST00000545608 VWA7Q9Y334 891 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 PCDHGB6Q9Y5F9 930 aa7.95□□□□□ -1.14
USP28-215ENST00000545608 KLF2Q9Y5W3 355 aaPredicted RBP7.95□□□□□ -1.14
USP28-215ENST00000545608 UQCRHLA0A096LP55 91 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 A0A1W2PNR3 127 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 TRBC2A0A5B9 178 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 ASPDHA6ND91 283 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 NPIPA5E9PKD4 350 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 FAM227AF5H4B4 570 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 NDC80O14777 642 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 NDUFS4O43181 175 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 SLC19A2O60779 497 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 B4GALT2O60909 372 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 NEURL1O76050 574 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 TTC4O95801 387 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 FHP07954 510 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 SNRPB2P08579 225 aaKnown RBP7.94□□□□□ -1.14
USP28-215ENST00000545608 ZNF888P0CJ79 500 aaPredicted RBP7.94□□□□□ -1.14
USP28-215ENST00000545608 HTR1EP28566 365 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 SLC26A5P58743 744 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 IL2P60568 153 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 ALDH6A1Q02252 535 aaKnown RBP7.94□□□□□ -1.14
USP28-215ENST00000545608 OC90Q02509 493 aaPredicted RBP7.94□□□□□ -1.14
USP28-215ENST00000545608 RBPJQ06330 500 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 PWP1Q13610 501 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 CSHL1Q14406 222 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 HERC3Q15034 1050 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 ZNF630Q2M218 657 aaPredicted RBP7.94□□□□□ -1.14
USP28-215ENST00000545608 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.94□□□□□ -1.14
USP28-215ENST00000545608 SLC25A25Q6KCM7 469 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 TRMT10BQ6PF06 316 aaKnown RBP7.94□□□□□ -1.14
USP28-215ENST00000545608 BNC2Q6ZN30 1099 aaPredicted RBP7.94□□□□□ -1.14
USP28-215ENST00000545608 KIAA0408Q6ZU52 694 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 GALNTL5Q7Z4T8 443 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.94□□□□□ -1.14
USP28-215ENST00000545608 GALNT7Q86SF2 657 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 RPS19BP1Q86WX3 136 aaKnown RBP7.94□□□□□ -1.14
USP28-215ENST00000545608 SPPL2CQ8IUH8 684 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 SLC5A8Q8N695 610 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 GPATCH11Q8N954 259 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 NT5CQ8TCD5 201 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 ELP5Q8TE02 316 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 ADAMTS18Q8TE60 1221 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 UTP15Q8TED0 518 aaKnown RBP7.94□□□□□ -1.14
USP28-215ENST00000545608 THAP3Q8WTV1 239 aaPredicted RBP7.94□□□□□ -1.14
USP28-215ENST00000545608 SLC5A11Q8WWX8 675 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 NEIL2Q969S2 332 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 GPR137Q96N19 417 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 WDR83Q9BRX9 315 aaKnown RBP7.94□□□□□ -1.14
USP28-215ENST00000545608 TRIM54Q9BYV2 358 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 DDX47Q9H0S4 455 aaKnown RBP7.94□□□□□ -1.14
USP28-215ENST00000545608 KLHL31Q9H511 634 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 ASIC3Q9UHC3 531 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 ZFP69BQ9UJL9 534 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 TINAGQ9UJW2 476 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 NPIPA1Q9UND3 350 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 ZNF835Q9Y2P0 537 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 SCN3AQ9NY46 2000 aa7.94□□□□□ -1.14
USP28-215ENST00000545608 GOLGA6L10A0A0M3HER8 536 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms