RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 ARHGAP11AQ6P4F7 1023 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 TGIF2LYQ8IUE0 185 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 CYP4Z2PQ8N1L4 340 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 ABHD11Q8NFV4 315 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 OR4K1Q8NGD4 311 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 EEF1AKMT1Q8WVE0 214 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 ZNF669Q96BR6 464 aaPredicted RBP16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 ALKBH8Q96BT7 664 aaKnown RBP16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 BAG1Q99933 345 aaPredicted RBP16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 FOXC2Q99958 501 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 DEFB126Q9BYW3 111 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 CCDC68Q9H2F9 335 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 SPNS1Q9H2V7 528 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 NECTIN3Q9NQS3 549 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 DEPPQ9NTK1 212 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 ZNF223Q9UK11 482 aaPredicted RBP16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 CTAGE15A4D2H0 777 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 USP27XA6NNY8 438 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 A8MUA0 341 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 EIF3FO00303 357 aaPredicted RBP16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 OR1F1O43749 312 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 KLK8O60259 260 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 HAUS5O94927 633 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 ZNF888P0CJ79 500 aaPredicted RBP16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 MYBPHQ13203 477 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 PHKG1Q16816 387 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 ANKRD22Q5VYY1 191 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 ARMC3Q5W041 872 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 CASC4Q6P4E1 433 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 GSTA5Q7RTV2 222 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 CTAGE6Q86UF2 777 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 OR4K3Q96R72 315 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 DEFB127Q9H1M4 99 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 CCM2LQ9NUG4 571 aaPredicted RBP16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 COMMD10Q9Y6G5 202 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 FREM3P0C091 2139 aa16.61■□□□□ 0.25
CLSTN3-214ENST00000542663 DNHD1Q96M86 4753 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 FLNAP21333 2647 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 ABCA4P78363 2273 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 TRBV11-1A0A0K0K1C0 115 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 TRBC2A0A5B9 178 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 PINLYPA6NC86 204 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 ITGA10O75578 1167 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 KLK2P20151 261 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 CCND1P24385 295 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 MAGEA6P43360 314 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 THOC5Q13769 683 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 KIAA0408Q6ZU52 694 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 RNF10Q8N5U6 811 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 B3GNT7Q8NFL0 401 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 NT5CQ8TCD5 201 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 UTP15Q8TED0 518 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 PYCR2Q96C36 320 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 AARSD1Q9BTE6 412 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 LIME1Q9H400 295 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 PARVBQ9HBI1 364 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 PRDM9Q9NQV7 894 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 PNPLA3Q9NST1 481 aa16.6■□□□□ 0.25
CLSTN3-214ENST00000542663 C4orf51C9J302 202 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 ZWINTO95229 277 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 SERPIND1P05546 499 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 C8GP07360 202 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 CCR8P51685 355 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 DLX5P56178 289 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 SKP1P63208 163 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 DHX9Q08211 1270 aaKnown RBP16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 HYAL2Q12891 473 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 SP140Q13342 867 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 TRIP13Q15645 432 aaPredicted RBP16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 GXYLT1Q4G148 440 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 CATSPEREQ5SY80 951 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 NIPAL1Q6NVV3 410 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 ACAD11Q709F0 780 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 STRA8Q7Z7C7 330 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 AGGF1Q8N302 714 aaeCLIP16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 TXLNBQ8N3L3 684 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 TMEM156Q8N614 296 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 NINJ1Q92982 152 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 SNF8Q96H20 258 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 HAUS8Q9BT25 410 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 ZNF358Q9NW07 568 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 KCMF1Q9P0J7 381 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 SAMD15Q9P1V8 674 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 ZFATQ9P243 1243 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 ZKSCAN5Q9Y2L8 839 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 L3MBTL1Q9Y468 752 aa16.59■□□□□ 0.25
CLSTN3-214ENST00000542663 NPIPA2E9PIF3 369 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 NPIPA3F8WFD2 350 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 PRKNO60260 465 aaPredicted RBP16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 SMIM10L1P0DMW3 83 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 CLCN2P51788 898 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 GPR143P51810 404 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 RAB8AP61006 207 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 FOLH1Q04609 750 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 LRRC8EQ6NSJ5 796 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 ABHD13Q7L211 337 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 ANKRD53Q8N9V6 530 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 PSD4Q8NDX1 1056 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 OR5M3Q8NGP4 307 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 OR56A3Q8NH54 315 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms