RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 C12orf43Q96C57 262 aaKnown RBP9.46□□□□□ -0.9
SS18-205ENST00000542420 C7orf34Q96L11 122 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 SMURF2Q9HAU4 748 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 ZSCAN32Q9NX65 697 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 THUMPD1Q9NXG2 353 aaKnown RBP9.46□□□□□ -0.9
SS18-205ENST00000542420 TAS2R9Q9NYW1 312 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 FAF1Q9UNN5 650 aaPredicted RBP9.46□□□□□ -0.9
SS18-205ENST00000542420 EXO1Q9UQ84 846 aaKnown RBP9.46□□□□□ -0.9
SS18-205ENST00000542420 PCDHGA8Q9Y5G5 932 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 SNX5Q9Y5X3 404 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 CENPFP49454 3210 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 KDM1AO60341 852 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 ZNF682O95780 498 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 APODP05090 189 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 NELFEP18615 380 aaKnown RBP9.45□□□□□ -0.9
SS18-205ENST00000542420 UQCRC2P22695 453 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 SOX11P35716 441 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 TRIM23P36406 574 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 IL12RB1P42701 662 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 TNFRSF4P43489 277 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 MVDP53602 400 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 PMS2P3Q13401 168 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 STARD3Q14849 445 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 ZNF697Q5TEC3 545 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 MLIPQ5VWP3 458 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 TMEM179BQ7Z7N9 219 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 SLC9B2Q86UD5 537 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 IPCEF1Q8WWN9 437 aaPredicted RBP9.45□□□□□ -0.9
SS18-205ENST00000542420 OR5P2Q8WZ92 322 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 TFGQ92734 400 aaPredicted RBP9.45□□□□□ -0.9
SS18-205ENST00000542420 MUL1Q969V5 352 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 NEUROD4Q9HD90 331 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 NDRG4Q9ULP0 352 aaKnown RBP9.45□□□□□ -0.9
SS18-205ENST00000542420 ASF1AQ9Y294 204 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 BTBD3Q9Y2F9 522 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 COQ6Q9Y2Z9 468 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 FAM32AQ9Y421 112 aaKnown RBP9.45□□□□□ -0.9
SS18-205ENST00000542420 KIAA0100Q14667 2235 aaKnown RBP9.45□□□□□ -0.9
SS18-205ENST00000542420 SH3PXD2BA1X283 911 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 K7ESM1 405 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 SLC1A7O00341 560 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 YY2O15391 372 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 CLIC3O95833 236 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 HOXC4P09017 264 aaPredicted RBP9.45□□□□□ -0.9
SS18-205ENST00000542420 ARAFP10398 606 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 HLA-EP13747 358 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 FRKP42685 505 aaPredicted RBP9.45□□□□□ -0.9
SS18-205ENST00000542420 CCR8P51685 355 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 KCNJ10P78508 379 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 EEF1A2Q05639 463 aaKnown RBP9.45□□□□□ -0.9
SS18-205ENST00000542420 CD47Q08722 323 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 SPIDRQ14159 915 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 ZIK1Q3SY52 487 aaPredicted RBP9.45□□□□□ -0.9
SS18-205ENST00000542420 IFI44LQ53G44 452 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 CATSPEREQ5SY80 951 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 DEPDC1Q5TB30 811 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 GTF2IRD2BQ6EKJ0 949 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 KIAA1161Q6NSJ0 714 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 FAM92BQ6ZTR7 304 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 GTF2IRD2Q86UP8 949 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.45□□□□□ -0.9
SS18-205ENST00000542420 SPARTQ8N0X7 666 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 SVOPQ8N4V2 548 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 ELSPBP1Q96BH3 223 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 MS4A8Q9BY19 250 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 DUSP21Q9H596 190 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 EPS8L2Q9H6S3 715 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 PALMDQ9NP74 551 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 C1GALT1Q9NS00 363 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 SCN3BQ9NY72 215 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 ANGPT4Q9Y264 503 aa9.45□□□□□ -0.9
SS18-205ENST00000542420 NUP214P35658 2090 aaPredicted RBP9.45□□□□□ -0.9
SS18-205ENST00000542420 TBC1D3BA6NDS4 549 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 H3BMQ9 156 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 KAT7O95251 611 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 ANXA8P13928 327 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 DDCP20711 480 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 GJA4P35212 333 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 PCBP3P57721 371 aaKnown RBP9.44□□□□□ -0.9
SS18-205ENST00000542420 C2orf80Q0P641 193 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 CNTN1Q12860 1018 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 CDK5R2Q13319 367 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 GAB1Q13480 694 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 NFE2L1Q14494 772 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 PLCL1Q15111 1095 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 AGBL4Q5VU57 503 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 KHDRBS2Q5VWX1 349 aaKnown RBP9.44□□□□□ -0.9
SS18-205ENST00000542420 KIAA1614Q5VZ46 1190 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 XAF1Q6GPH4 301 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 THOC7Q6I9Y2 204 aaKnown RBP9.44□□□□□ -0.9
SS18-205ENST00000542420 VITQ6UXI7 678 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 NANOGNBQ7Z5D8 188 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 HEATR4Q86WZ0 1026 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 ARMC8Q8IUR7 673 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 RNF175Q8N4F7 328 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 ZNF366Q8N895 744 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 PSMA8Q8TAA3 256 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 COG8Q96MW5 612 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 SLC35A5Q9BS91 424 aa9.44□□□□□ -0.9
SS18-205ENST00000542420 SARGQ9BW04 601 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms