RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 VWA7Q9Y334 891 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 ADGRG4Q8IZF6 3080 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 TCRBV16S1A1N1A0A5B0 115 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 CTAGE15A4D2H0 777 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 URADA6NGE7 173 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 CES2O00748 559 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 ASNA1O43681 348 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 PRMT3O60678 531 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 B4GALT2O60909 372 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 GUCA1CO95843 209 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 SERPIND1P05546 499 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 ZNF24P17028 368 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 ZNF37AP17032 561 aaPredicted RBP10.63□□□□□ -0.71
VPS28-214ENST00000531032 POU3F2P20265 443 aaPredicted RBP10.63□□□□□ -0.71
VPS28-214ENST00000531032 TRHRP34981 398 aaPredicted RBP10.63□□□□□ -0.71
VPS28-214ENST00000531032 CYB561P49447 251 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 MLF1P58340 268 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 BTG2P78543 158 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 HYAL2Q12891 473 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 CSHL1Q14406 222 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 CDSNQ15517 529 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 MAPKAPK3Q16644 382 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 BBS9Q3SYG4 887 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 RNFT1Q5M7Z0 435 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 FAM45BPQ6NSW5 357 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 CTAGE6Q86UF2 777 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 NFAM1Q8NET5 270 aaPredicted RBP10.63□□□□□ -0.71
VPS28-214ENST00000531032 TRPV3Q8NET8 790 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 FAM45AQ8TCE6 357 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 CAPZA3Q96KX2 299 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 TSNARE1Q96NA8 513 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 PTCHD1Q96NR3 888 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 PHF12Q96QT6 1004 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 WDR83Q9BRX9 315 aaKnown RBP10.63□□□□□ -0.71
VPS28-214ENST00000531032 PELI2Q9HAT8 420 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 PPANQ9NQ55 473 aaKnown RBP10.63□□□□□ -0.71
VPS28-214ENST00000531032 PRDM9Q9NQV7 894 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 CACNA1CQ13936 2221 aa10.63□□□□□ -0.71
VPS28-214ENST00000531032 TACC2O95359 2948 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 C4orf51C9J302 202 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 C19orf84I3L1E1 186 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 CLDN14O95500 239 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 SERPINA6P08185 405 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 SNRPB2P08579 225 aaKnown RBP10.62□□□□□ -0.71
VPS28-214ENST00000531032 SMIM10L1P0DMW3 83 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 RNH1P13489 461 aaKnown RBP10.62□□□□□ -0.71
VPS28-214ENST00000531032 MAOAP21397 527 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 IVDP26440 423 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 ELK3P41970 407 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 HLCSP50747 726 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 RAB8AP61006 207 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 GNG11P61952 73 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 GTF3C1Q12789 2109 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 FRG1Q14331 258 aaKnown RBP10.62□□□□□ -0.71
VPS28-214ENST00000531032 STEAP4Q687X5 459 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 TRMT10BQ6PF06 316 aaKnown RBP10.62□□□□□ -0.71
VPS28-214ENST00000531032 NXPE4Q6UWF7 544 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 TMPRSS11BQ86T26 416 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 THOC6Q86W42 341 aaKnown RBP10.62□□□□□ -0.71
VPS28-214ENST00000531032 ZNF295-AS1Q8N0V1 137 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 CYP4X1Q8N118 509 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 CPSF7Q8N684 471 aaKnown RBP10.62□□□□□ -0.71
VPS28-214ENST00000531032 CREB3L4Q8TEY5 395 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 AGAP11Q8TF27 550 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 PHF10Q8WUB8 498 aaKnown RBP10.62□□□□□ -0.71
VPS28-214ENST00000531032 ANKRD7Q92527 254 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 MTFMTQ96DP5 389 aaKnown RBP10.62□□□□□ -0.71
VPS28-214ENST00000531032 SMIM10Q96HG1 83 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 LURAP1Q96LR2 239 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 AIF1LQ9BQI0 150 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 AICDAQ9GZX7 198 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 DDX47Q9H0S4 455 aaKnown RBP10.62□□□□□ -0.71
VPS28-214ENST00000531032 KLHL31Q9H511 634 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 GPAMQ9HCL2 828 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 DYRK1BQ9Y463 629 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 ASB1Q9Y576 335 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 KCNE2Q9Y6J6 123 aa10.62□□□□□ -0.71
VPS28-214ENST00000531032 E9PLN8 166 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 PSMD12O00232 456 aaPredicted RBP10.61□□□□□ -0.71
VPS28-214ENST00000531032 FCHO1O14526 889 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 ADAM10O14672 748 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 ABOP16442 354 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 HNF4AP41235 474 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 ITGA8P53708 1063 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 CDKL1Q00532 357 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 HSF1Q00613 529 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 MORF4L2Q15014 288 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 TERF2Q15554 542 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 NCCRP1Q6ZVX7 275 aaPredicted RBP10.61□□□□□ -0.71
VPS28-214ENST00000531032 FGD2Q7Z6J4 655 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 DOLPP1Q86YN1 238 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 SCUBE1Q8IWY4 988 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 PDIK1LQ8N165 341 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 CA13Q8N1Q1 262 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 POGLUT1Q8NBL1 392 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 ACBD4Q8NC06 268 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 APCDD1LQ8NCL9 501 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 ARMC2Q8NEN0 867 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 TMEM125Q96AQ2 219 aa10.61□□□□□ -0.71
VPS28-214ENST00000531032 LRRC39Q96DD0 335 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms