RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 MEOX1P50221 254 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 SKP1P63208 163 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 NIPAL1Q6NVV3 410 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 CTAGE6Q86UF2 777 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 SULF2Q8IWU5 870 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 MARVELD2Q8N4S9 558 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 POGLUT1Q8NBL1 392 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 TRIM58Q8NG06 486 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 FAM57AQ8TBR7 257 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 UTP15Q8TED0 518 aaKnown RBP22.04■■□□□ 1.12
CPSF1-202ENST00000527827 TMEM125Q96AQ2 219 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 HIST1H2AHQ96KK5 128 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 HIST1H2AJQ99878 128 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 H2AFJQ9BTM1 129 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 NECTIN3Q9NQS3 549 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 ARL15Q9NXU5 204 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 ZFP69BQ9UJL9 534 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 A0A1B0GTH9 108 aa22.03■■□□□ 1.12
CPSF1-202ENST00000527827 PTGS2P35354 604 aa22.03■■□□□ 1.12
CPSF1-202ENST00000527827 RFC3P40938 356 aa22.03■■□□□ 1.12
CPSF1-202ENST00000527827 RGS1Q08116 209 aa22.03■■□□□ 1.12
CPSF1-202ENST00000527827 ABHD13Q7L211 337 aa22.03■■□□□ 1.12
CPSF1-202ENST00000527827 NEIL2Q969S2 332 aa22.03■■□□□ 1.12
CPSF1-202ENST00000527827 COQ3Q9NZJ6 369 aa22.03■■□□□ 1.12
CPSF1-202ENST00000527827 KLF13Q9Y2Y9 288 aaPredicted RBP22.03■■□□□ 1.12
CPSF1-202ENST00000527827 INTS1Q8N201 2190 aaKnown RBP22.03■■□□□ 1.12
CPSF1-202ENST00000527827 ZFHX3Q15911 3703 aa22.03■■□□□ 1.12
CPSF1-202ENST00000527827 A8MUA0 341 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 FCHO1O14526 889 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 TFECO14948 347 aaPredicted RBP22.02■■□□□ 1.12
CPSF1-202ENST00000527827 TPOP07202 933 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 SMIM10L1P0DMW3 83 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 AHRP35869 848 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 PGGT1BP53609 377 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 AP1S2P56377 157 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 HYAL2Q12891 473 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 CRYMQ14894 314 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 CD163Q86VB7 1156 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 RASGEF1CQ8N431 466 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 ANKRD53Q8N9V6 530 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 APCDD1LQ8NCL9 501 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 SLC5A11Q8WWX8 675 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 FBXL8Q96CD0 374 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 SMIM10Q96HG1 83 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 DEFB126Q9BYW3 111 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 SLC6A16Q9GZN6 736 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 CLK4Q9HAZ1 481 aaKnown RBP22.02■■□□□ 1.12
CPSF1-202ENST00000527827 PRDM9Q9NQV7 894 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 SPG11Q96JI7 2443 aa22.02■■□□□ 1.12
CPSF1-202ENST00000527827 ZNF407Q9C0G0 2248 aa22.02■■□□□ 1.11
CPSF1-202ENST00000527827 KRT38O76015 456 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 AHSGP02765 367 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 CCDC175P0C221 793 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 RNH1P13489 461 aaKnown RBP22.01■■□□□ 1.11
CPSF1-202ENST00000527827 IGFBP2P18065 325 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 PGAM1P18669 254 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 HNF4AP41235 474 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 RAB8AP61006 207 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 REEP5Q00765 189 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 CYP1B1Q16678 543 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 CMPK2Q5EBM0 449 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 CCDC137Q6PK04 289 aaKnown RBP22.01■■□□□ 1.11
CPSF1-202ENST00000527827 TBC1D19Q8N5T2 526 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 C16orf52Q8NHV5 167 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 MS4A14Q96JA4 679 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 KLHL31Q9H511 634 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 ZFATQ9P243 1243 aa22.01■■□□□ 1.11
CPSF1-202ENST00000527827 C4orf51C9J302 202 aa22■■□□□ 1.11
CPSF1-202ENST00000527827 KLRC4-KLRK1H3BQV0 150 aa22■■□□□ 1.11
CPSF1-202ENST00000527827 PEX1O43933 1283 aa22■■□□□ 1.11
CPSF1-202ENST00000527827 HS6ST1O60243 411 aa22■■□□□ 1.11
CPSF1-202ENST00000527827 TFEBP19484 476 aa22■■□□□ 1.11
CPSF1-202ENST00000527827 IL2P60568 153 aa22■■□□□ 1.11
CPSF1-202ENST00000527827 CSHL1Q14406 222 aa22■■□□□ 1.11
CPSF1-202ENST00000527827 CEP128Q6ZU80 1094 aa22■■□□□ 1.11
CPSF1-202ENST00000527827 CNTN4Q8IWV2 1026 aa22■■□□□ 1.11
CPSF1-202ENST00000527827 TSNARE1Q96NA8 513 aa22■■□□□ 1.11
CPSF1-202ENST00000527827 AICDAQ9GZX7 198 aa22■■□□□ 1.11
CPSF1-202ENST00000527827 RHBGQ9H310 441 aa22■■□□□ 1.11
CPSF1-202ENST00000527827 IKZF3Q9UKT9 509 aa22■■□□□ 1.11
CPSF1-202ENST00000527827 NF1P21359 2839 aa21.99■■□□□ 1.11
CPSF1-202ENST00000527827 PHF3Q92576 2039 aaKnown RBP21.99■■□□□ 1.11
CPSF1-202ENST00000527827 TRBV11-1A0A0K0K1C0 115 aa21.99■■□□□ 1.11
CPSF1-202ENST00000527827 GOLGA6L6A8MZA4 724 aa21.99■■□□□ 1.11
CPSF1-202ENST00000527827 FANCGO15287 622 aa21.99■■□□□ 1.11
CPSF1-202ENST00000527827 CDC40O60508 579 aaKnown RBP eCLIP21.99■■□□□ 1.112e-9■■■■□ 25.1
CPSF1-202ENST00000527827 GUCA1CO95843 209 aa21.99■■□□□ 1.11
CPSF1-202ENST00000527827 MDGA2Q7Z553 956 aa21.99■■□□□ 1.11
CPSF1-202ENST00000527827 PPIL6Q8IXY8 311 aa21.99■■□□□ 1.11
CPSF1-202ENST00000527827 CA13Q8N1Q1 262 aa21.99■■□□□ 1.11
CPSF1-202ENST00000527827 ZFP62Q8NB50 900 aaPredicted RBP21.99■■□□□ 1.11
CPSF1-202ENST00000527827 B3GNT7Q8NFL0 401 aa21.99■■□□□ 1.11
CPSF1-202ENST00000527827 ATL1Q8WXF7 558 aa21.99■■□□□ 1.11
CPSF1-202ENST00000527827 TRIM54Q9BYV2 358 aa21.99■■□□□ 1.11
CPSF1-202ENST00000527827 NPDC1Q9NQX5 325 aaPredicted RBP21.99■■□□□ 1.11
CPSF1-202ENST00000527827 PLSCR2Q9NRY7 297 aa21.99■■□□□ 1.11
CPSF1-202ENST00000527827 SLC17A6Q9P2U8 582 aa21.99■■□□□ 1.11
CPSF1-202ENST00000527827 ZNF223Q9UK11 482 aaPredicted RBP21.99■■□□□ 1.11
CPSF1-202ENST00000527827 DNAJC13O75165 2243 aa21.98■■□□□ 1.11
CPSF1-202ENST00000527827 PSMD12O00232 456 aaPredicted RBP21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms