RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 XKR6Q5GH73 641 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 OR5T3Q8NGG3 340 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 DNAJB14Q8TBM8 379 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 BRIX1Q8TDN6 353 aaKnown RBP19.43■□□□□ 0.7
VPS28-206ENST00000526734 SLC44A1Q8WWI5 657 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 PSMF1Q92530 271 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 EXT2Q93063 718 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 NPLQ9BXD5 320 aaPredicted RBP19.43■□□□□ 0.7
VPS28-206ENST00000526734 RNF32Q9H0A6 362 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 OPTCQ9UBM4 332 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 A0A096LPK6 155 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 CNTFP26441 200 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 TYK2P29597 1187 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 RAB8AP61006 207 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 IRF8Q02556 426 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 TGM3Q08188 693 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 BMPR2Q13873 1038 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 DOC2AQ14183 400 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 ZNF169Q14929 603 aaPredicted RBP19.42■□□□□ 0.7
VPS28-206ENST00000526734 ADPRMQ3LIE5 342 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 QSOX2Q6ZRP7 698 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 LINC00696Q6ZRV3 163 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 LANCL3Q6ZV70 420 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 CUZD1Q86UP6 607 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 CENPLQ8N0S6 344 aaPredicted RBP19.42■□□□□ 0.7
VPS28-206ENST00000526734 CNPY4Q8N129 248 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 KCTD4Q8WVF5 259 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 NXNL1Q96CM4 212 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 LPAR4Q99677 370 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 RHBGQ9H310 441 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 PTGFRNQ9P2B2 879 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 NBASA2RRP1 2371 aa19.42■□□□□ 0.7
VPS28-206ENST00000526734 HMX2A2RU54 273 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 CLEC18AA5D8T8 446 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 K7EPI3 171 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 KRT38O76015 456 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 SEC24DO94855 1032 aaPredicted RBP19.41■□□□□ 0.7
VPS28-206ENST00000526734 KLHL2O95198 593 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 ACSL3O95573 720 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 ECHS1P30084 290 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 HNF4AP41235 474 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 KCNC1P48547 511 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 ARG2P78540 354 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 BTBD16Q32M84 506 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 RPUSD3Q6P087 351 aaKnown RBP19.41■□□□□ 0.7
VPS28-206ENST00000526734 METTL2BQ6P1Q9 378 aaKnown RBP19.41■□□□□ 0.7
VPS28-206ENST00000526734 TRIM40Q6P9F5 258 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 CLEC18BQ6UXF7 455 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 IFT20Q8IY31 132 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 CLEC18CQ8NCF0 446 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 SRFBP1Q8NEF9 429 aaKnown RBP19.41■□□□□ 0.7
VPS28-206ENST00000526734 ARMC2Q8NEN0 867 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 OR2L5Q8NG80 312 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 M1APQ8TC57 530 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 CCT6BQ92526 530 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 HAS2Q92819 552 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 ISL2Q96A47 359 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 SNRNP40Q96DI7 357 aaKnown RBP19.41■□□□□ 0.7
VPS28-206ENST00000526734 MS4A6EQ96DS6 147 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 MRRFQ96E11 262 aaKnown RBP19.41■□□□□ 0.7
VPS28-206ENST00000526734 RBCK1Q9BYM8 510 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 ROGDIQ9GZN7 287 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 AGPAT4Q9NRZ5 378 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 MAP10Q9P2G4 905 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 ZNF180Q9UJW8 692 aa19.41■□□□□ 0.7
VPS28-206ENST00000526734 COPG1Q9Y678 874 aaKnown RBP19.41■□□□□ 0.7
VPS28-206ENST00000526734 A0A087WUV0 522 aaPredicted RBP19.4■□□□□ 0.7
VPS28-206ENST00000526734 LRIT2A6NDA9 550 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 UBXN8O00124 270 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 ERI3O43414 337 aaKnown RBP19.4■□□□□ 0.7
VPS28-206ENST00000526734 ALDOAP04075 364 aaKnown RBP19.4■□□□□ 0.7
VPS28-206ENST00000526734 MYBL2P10244 700 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 ITGAMP11215 1152 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 ACTN3Q08043 901 aaPredicted RBP19.4■□□□□ 0.7
VPS28-206ENST00000526734 CHIT1Q13231 466 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 RCN2Q14257 317 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 NAA30Q147X3 362 aaPredicted RBP19.4■□□□□ 0.7
VPS28-206ENST00000526734 INAQ16352 499 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 PRR30Q53SZ7 412 aaPredicted RBP19.4■□□□□ 0.7
VPS28-206ENST00000526734 SFT2D3Q587I9 215 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 ABHD17BQ5VST6 288 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 PAPD4Q6PIY7 484 aaKnown RBP19.4■□□□□ 0.7
VPS28-206ENST00000526734 FAM26EQ8N5C1 309 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 SIRT6Q8N6T7 355 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 ESAMQ96AP7 390 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 CNDP1Q96KN2 507 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 REXO4Q9GZR2 422 aaKnown RBP19.4■□□□□ 0.7
VPS28-206ENST00000526734 KLHL31Q9H511 634 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 MMP25Q9NPA2 562 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 PRDM9Q9NQV7 894 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 ADGRE2Q9UHX3 823 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 TMCO1Q9UM00 188 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 MRPS33Q9Y291 106 aaKnown RBP19.4■□□□□ 0.7
VPS28-206ENST00000526734 MMACHCQ9Y4U1 282 aa19.4■□□□□ 0.7
VPS28-206ENST00000526734 TRAV17A0A0B4J275 112 aa19.39■□□□□ 0.69
VPS28-206ENST00000526734 CDK2AP1O14519 115 aa19.39■□□□□ 0.69
VPS28-206ENST00000526734 PRMT3O60678 531 aa19.39■□□□□ 0.69
VPS28-206ENST00000526734 CDC123O75794 336 aaPredicted RBP19.39■□□□□ 0.69
VPS28-206ENST00000526734 MTHFD2P13995 350 aa19.39■□□□□ 0.69
VPS28-206ENST00000526734 EPB42P16452 691 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms