RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 DTWD1Q8N5C7 304 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 ARMC2Q8NEN0 867 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 OR2L5Q8NG80 312 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 HUS1BQ8NHY5 278 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 STT3BQ8TCJ2 826 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 TCP10LQ8TDR4 215 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 TRPC4APQ8TEL6 797 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 MS4A6EQ96DS6 147 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 VPS50Q96JG6 964 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 ZNF382Q96SR6 550 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 CENPKQ9BS16 269 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 NPLQ9BXD5 320 aaPredicted RBP13.52□□□□□ -0.25
NUP54-216ENST00000514901 ROGDIQ9GZN7 287 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 KLHL31Q9H511 634 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 CTSFQ9UBX1 484 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 PPT2Q9UMR5 302 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 POLHQ9Y253 713 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 CDC14CA4D256 554 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 PCDH17O14917 1159 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 ERI3O43414 337 aaKnown RBP13.51□□□□□ -0.25
NUP54-216ENST00000514901 CYC1P08574 325 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 ATXN8OSP0DMR3 200 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 PRKAR1AP10644 381 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 H2AFXP16104 143 aaPredicted RBP13.51□□□□□ -0.25
NUP54-216ENST00000514901 ARFIP1P53367 373 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 NAGLUP54802 743 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 RAB8AP61006 207 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 BTN3A2P78410 334 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 IFT88Q13099 833 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 COL9A2Q14055 689 aaPredicted RBP13.51□□□□□ -0.25
NUP54-216ENST00000514901 ZRSR2Q15696 482 aaKnown RBP13.51□□□□□ -0.25
NUP54-216ENST00000514901 DEPDC1Q5TB30 811 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 FRG2Q64ET8 278 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 TTC19Q6DKK2 380 aaPredicted RBP13.51□□□□□ -0.25
NUP54-216ENST00000514901 GPRIN3Q6ZVF9 776 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 PRSS41Q7RTY9 318 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 HDXQ7Z353 690 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 PDSS2Q86YH6 399 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 CCNYL1Q8N7R7 359 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 OR4F6Q8NGB9 312 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 OR51Q1Q8NH59 317 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 WDR20Q8TBZ3 569 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 KCNC2Q96PR1 638 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 FAM111AQ96PZ2 611 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 CDK15Q96Q40 435 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 FRG2BQ96QU4 278 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 SPSB2Q99619 263 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 TBCDQ9BTW9 1192 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 MS4A8Q9BY19 250 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 C12orf65Q9H3J6 166 aaKnown RBP13.51□□□□□ -0.25
NUP54-216ENST00000514901 SEMA3GQ9NS98 782 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 TRPS1Q9UHF7 1281 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 SNX6Q9UNH7 406 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 LOC400499M0QZD8 3231 aa13.51□□□□□ -0.25
NUP54-216ENST00000514901 TM9SF1O15321 606 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 CNOT3O75175 753 aaKnown RBP13.5□□□□□ -0.25
NUP54-216ENST00000514901 BMP10O95393 424 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 TBX6O95947 436 aaPredicted RBP13.5□□□□□ -0.25
NUP54-216ENST00000514901 TGFB1P01137 390 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 ENO1P06733 434 aaKnown RBP13.5□□□□□ -0.25
NUP54-216ENST00000514901 CREB1P16220 341 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 MMP11P24347 488 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 HNRNPH1P31943 449 aaKnown RBP13.5□□□□□ -0.25
NUP54-216ENST00000514901 TSFMP43897 325 aaKnown RBP13.5□□□□□ -0.25
NUP54-216ENST00000514901 ZNF33BQ06732 778 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 CUL3Q13618 768 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 IL10RAQ13651 578 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 VWA2Q5GFL6 755 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 KHDRBS2Q5VWX1 349 aaKnown RBP13.5□□□□□ -0.25
NUP54-216ENST00000514901 ABHD17CQ6PCB6 329 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 RPS27LQ71UM5 84 aaKnown RBP13.5□□□□□ -0.25
NUP54-216ENST00000514901 C10orf107Q8IVU9 208 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 ADAMTS17Q8TE56 1095 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 RGMAQ96B86 450 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 CRELD1Q96HD1 420 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 CNDP1Q96KN2 507 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 OR1F2PQ96R84 312 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 F2RL3Q96RI0 385 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 MTERF1Q99551 399 aaKnown RBP13.5□□□□□ -0.25
NUP54-216ENST00000514901 TRMOQ9BU70 441 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 SLC29A3Q9BZD2 475 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 AICDAQ9GZX7 198 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 GSTO2Q9H4Y5 243 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 ELOVL6Q9H5J4 265 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 SOX17Q9H6I2 414 aaPredicted RBP13.5□□□□□ -0.25
NUP54-216ENST00000514901 TMBIM4Q9HC24 238 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 DMRT3Q9NQL9 472 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 SLC17A7Q9P2U7 560 aa13.5□□□□□ -0.25
NUP54-216ENST00000514901 PEX12O00623 359 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 PPP6CO00743 305 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 CHST10O43529 356 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 B3GALT2O43825 422 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 RDH16O75452 317 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 ZWINTO95229 277 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 ESRRBO95718 433 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 KRT6AP02538 564 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 KRT6BP04259 564 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 HEXBP07686 556 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 UMODP07911 640 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 TSPAN8P19075 237 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms