RNA–Protein interactions for RNA: ENST00000514110.5

SNHG4-208, Transcript of small nucleolar RNA host gene 4, human

TSL 1 (best)

Gene SNHG4, Length 679 nt, Biotype retained intron, Subcellular localisation Nucleoplasm .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG4-208	ENST00000514110	THOC6	Q86W42	341 aa	Known RBP	11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	SPPL2C	Q8IUH8	684 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	LGI4	Q8N135	537 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	PDIK1L	Q8N165	341 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	TMEM178A	Q8NBL3	297 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	NFAM1	Q8NET5	270 aa	Predicted RBP	11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	CREB3L4	Q8TEY5	395 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	SMIM10	Q96HG1	83 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	MAGED4	Q96JG8	741 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	RUBCNL	Q9H714	662 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	PELI2	Q9HAT8	420 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	NECTIN3	Q9NQS3	549 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	NPIPA1	Q9UND3	350 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	SLC22A14	Q9Y267	594 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	DYRK1B	Q9Y463	629 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	PSAT1	Q9Y617	370 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	TEX264	Q9Y6I9	313 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	DCHS2	Q6V1P9	2916 aa		11.44	□□□□□ -0.58
SNHG4-208	ENST00000514110	IGKV3D-11	A0A0A0MRZ8	115 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	NPEPPSL1	A6NEC2	478 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	SAGE2P	A6NJ88	616 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110		A8MUA0	341 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	ASNA1	O43681	348 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	NME2P1	O60361	137 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	SLC25A12	O75746	678 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	MLYCD	O95822	493 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	ESRRA	P11474	423 aa	Predicted RBP	11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	ZNF37A	P17032	561 aa	Predicted RBP	11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	SAT1	P21673	171 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	NME2	P22392	152 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	MLF1	P58340	268 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	HSF1	Q00613	529 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	MORF4L2	Q15014	288 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	RBBP5	Q15291	538 aa	Known RBP	11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	MAPKAPK3	Q16644	382 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	C18orf21	Q32NC0	220 aa	Predicted RBP	11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	TOR1AIP1	Q5JTV8	583 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	NIPAL1	Q6NVV3	410 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	XKRX	Q6PP77	449 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	TMPRSS11B	Q86T26	416 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	CHERP	Q8IWX8	916 aa	Known RBP	11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	CPSF7	Q8N684	471 aa	Known RBP	11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	HORMAD2	Q8N7B1	307 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	AIF1L	Q9BQI0	150 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	TRIM51	Q9BSJ1	452 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	RHBG	Q9H310	441 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	CHST11	Q9NPF2	352 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	PRDM9	Q9NQV7	894 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	MEMO1	Q9Y316	297 aa		11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	NCOA6	Q14686	2063 aa	Predicted RBP	11.43	□□□□□ -0.58
SNHG4-208	ENST00000514110	FAM95C	A0A1B0GW59	222 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	TCRBV16S1A1N1	A0A5B0	115 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	URAD	A6NGE7	173 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	C19orf84	I3L1E1	186 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	SERPINA6	P08185	405 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	RNH1	P13489	461 aa	Known RBP	11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	ELAVL4	P26378	380 aa	Known RBP	11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	PTGER4	P35408	488 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	CYB561	P49447	251 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	ITGA8	P53708	1063 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	FGD2	Q7Z6J4	655 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	ANKMY2	Q8IV38	441 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	KLHL7	Q8IXQ5	586 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	CA13	Q8N1Q1	262 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	FAM98A	Q8NCA5	519 aa	Known RBP	11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	TRPV3	Q8NET8	790 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	ANKRD49	Q8WVL7	239 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	LRRC39	Q96DD0	335 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	PHF12	Q96QT6	1004 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	TRIM45	Q9H8W5	580 aa	Predicted RBP	11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	CLK4	Q9HAZ1	481 aa	Known RBP	11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	TRMT1	Q9NXH9	659 aa	Known RBP	11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110	ZFAT	Q9P243	1243 aa		11.42	□□□□□ -0.58
SNHG4-208	ENST00000514110		A0A0G2JN53	185 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	PSMD12	O00232	456 aa	Predicted RBP	11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	CDK2AP1	O14519	115 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	TP73	O15350	636 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	COX6B1	P14854	86 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	ABO	P16442	354 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	ZNF24	P17028	368 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	POU3F2	P20265	443 aa	Predicted RBP	11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	AGA	P20933	346 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	TRHR	P34981	398 aa	Predicted RBP	11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	GDF5	P43026	501 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	HLCS	P50747	726 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	SMS	P52788	366 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	TAS2R39	P59534	338 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	BTN3A2	P78410	334 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	CDKL1	Q00532	357 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	DR1	Q01658	176 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	MGAT5	Q09328	741 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	RUNX2	Q13950	521 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	FRG1	Q14331	258 aa	Known RBP	11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	FASTKD3	Q14CZ7	662 aa	Known RBP	11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	TSN	Q15631	228 aa	Known RBP	11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	C3P1	Q6ZMU1	363 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	GDF7	Q7Z4P5	450 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	ZC3HC1	Q86WB0	502 aa	Known RBP	11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	DOLPP1	Q86YN1	238 aa		11.41	□□□□□ -0.58
SNHG4-208	ENST00000514110	CEP97	Q8IW35	865 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms