RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ZNF655Q8N720 491 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 SLC26A7Q8TE54 656 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 TRIM63Q969Q1 353 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 NRBF2Q96F24 287 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 PITPNM3Q9BZ71 974 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 THSD1Q9NS62 852 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 TRMT6Q9UJA5 497 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 BAHCC1Q9P281 2608 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 LY6G6EA0A0G2JKS1 128 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 IGHV5-10-1A0A0J9YXX1 117 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 TMEM150CB9EJG8 249 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 OR7A10O76100 309 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 KLHL2O95198 593 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 B3GALT4O96024 378 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 EPOP01588 193 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 RD3LP0DJH9 198 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 GNAZP19086 355 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 CD1CP29017 333 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 CFHR1Q03591 330 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 FOLH1Q04609 750 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 TUBB3Q13509 450 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 DNASE1L3Q13609 305 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 CRTC2Q53ET0 693 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 RALGPS1Q5JS13 557 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 ARHGAP11AQ6P4F7 1023 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 C16orf54Q6UWD8 224 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 RIPOR1Q6ZS17 1223 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 SNX31Q8N9S9 440 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 AGBL5Q8NDL9 886 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 OR5H6Q8NGV6 325 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 PNPT1Q8TCS8 783 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 GPBAR1Q8TDU6 330 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 FGF11Q92914 225 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 MOCOSQ96EN8 888 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 ZNF285Q96NJ3 590 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 DPYSL5Q9BPU6 564 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 TMBIM4Q9HC24 238 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 CASS4Q9NQ75 786 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 NLE1Q9NVX2 485 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 ZNF224Q9NZL3 707 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 U3KQA8 63 aa7.58□□□□□ -1.2
LIMCH1-219ENST00000514096 KPNA4O00629 521 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 ATXN7O15265 892 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 ICAM2P13598 275 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 ST6GAL1P15907 406 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 FOXN2P32314 431 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 SUOXP51687 545 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 ZNF33BQ06732 778 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 STX3Q13277 289 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 CSHL1Q14406 222 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 USP10Q14694 798 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 PYHIN1Q6K0P9 492 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 FRA10AC1Q70Z53 315 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 PIK3C3Q8NEB9 887 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 ADCY4Q8NFM4 1077 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 GPR156Q8NFN8 814 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 ASZ1Q8WWH4 475 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 TMEM120AQ9BXJ8 343 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 TRIM15Q9C019 465 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 ACTR6Q9GZN1 396 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 ERVMER34-1Q9H9K5 563 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 FGF21Q9NSA1 209 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 DNAJC11Q9NVH1 559 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 LHX6Q9UPM6 363 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 UGT2A1Q9Y4X1 527 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 C15orf38-AP3S2A0A0A6YYH1 394 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 A0A1W2PNU3 283 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 TMEM120BA0PK00 339 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 TM9SF1O15321 606 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 FAM87AP0C7U9 286 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 PABPC4LP0CB38 370 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 FGF3P11487 239 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 FOLR1P15328 257 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 PIK3CGP48736 1102 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 E2F1Q01094 437 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 DPTQ07507 201 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 STX5Q13190 355 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 SNTA1Q13424 505 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 LAPTM5Q13571 262 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 FASTKQ14296 549 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 ITIH4Q14624 930 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 TMED2Q15363 201 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 C18orf21Q32NC0 220 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 SGO1Q5FBB7 561 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 KCTD11Q693B1 232 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 PAQR3Q6TCH7 311 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 DCDC5Q6ZRR9 648 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 TTLL10Q6ZVT0 673 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 CENPUQ71F23 418 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 GPR135Q8IZ08 494 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 ZFP28Q8NHY6 868 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 WDR36Q8NI36 951 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 HCAR2Q8TDS4 363 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 CNOT10Q9H9A5 744 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 POLR1BQ9H9Y6 1135 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 NKIRAS1Q9NYS0 192 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 TAC3Q9UHF0 121 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 ACAD8Q9UKU7 415 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 DGKBQ9Y6T7 804 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 A8MV72 311 aaPredicted RBP7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms