RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	KERA	O60938	352 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	VPS4B	O75351	444 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	SH3BGRL	O75368	114 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	TBX6	O95947	436 aa	Predicted RBP	12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	FH	P07954	510 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	SERPINA6	P08185	405 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	RHOXF2B	P0C7M4	288 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	SMIM10L1	P0DMW3	83 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	MTHFD2	P13995	350 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	SOX11	P35716	441 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	SERPINB8	P50452	374 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	BTG2	P78543	158 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	CHIT1	Q13231	466 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	MFAP5	Q13361	173 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	MRPL49	Q13405	166 aa	Known RBP	12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	NSDHL	Q15738	373 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	BTBD16	Q32M84	506 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	GLE1	Q53GS7	698 aa	Known RBP	12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	SFT2D3	Q587I9	215 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	CDKL4	Q5MAI5	379 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	FCRLB	Q6BAA4	426 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	IGFL2	Q6UWQ7	119 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	RELL1	Q8IUW5	271 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	IQCK	Q8N0W5	287 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	KRT78	Q8N1N4	520 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	PLD6	Q8N2A8	252 aa	Known RBP	12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	DNAJB14	Q8TBM8	379 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	PPP4R1	Q8TF05	950 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	SLC44A1	Q8WWI5	657 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	TBC1D20	Q96BZ9	403 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	SMIM10	Q96HG1	83 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	PAFAH2	Q99487	392 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	RHOXF2	Q9BQY4	288 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	EPS8L2	Q9H6S3	715 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	ZNF358	Q9NW07	568 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	GPRC5B	Q9NZH0	403 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	ZNF490	Q9ULM2	529 aa	Predicted RBP	12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	VPS4A	Q9UN37	437 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	PCDHGA10	Q9Y5H3	936 aa		12.51	□□□□□ -0.41
RNF4-215	ENST00000511843	TCP11X1	B4DZS4	312 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	WFS1	O76024	890 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	TUBB4A	P04350	444 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	MAOA	P21397	527 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	TYK2	P29597	1187 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	PLA2G16	P53816	162 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	IRF8	Q02556	426 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	PAPD4	Q6PIY7	484 aa	Known RBP	12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	LRRC70	Q7Z2Q7	622 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	GSPT2	Q8IYD1	628 aa	Known RBP	12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	CA13	Q8N1Q1	262 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	RNF175	Q8N4F7	328 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	TEX9	Q8N6V9	391 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	GAL3ST3	Q96A11	431 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	MS4A6E	Q96DS6	147 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	PTCD3	Q96EY7	689 aa	Known RBP	12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	GPR78	Q96P69	363 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	OR1F2P	Q96R84	312 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	TUBB6	Q9BUF5	446 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	FUT8	Q9BYC5	575 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	PRM3	Q9NNZ6	103 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	CPSF2	Q9P2I0	782 aa	Known RBP	12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	OPTC	Q9UBM4	332 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	SVIL	O95425	2214 aa		12.5	□□□□□ -0.41
RNF4-215	ENST00000511843	SETX	Q7Z333	2677 aa	Known RBP	12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	ZGRF1	Q86YA3	2104 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	LRIT2	A6NDA9	550 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	URAD	A6NGE7	173 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	ANKDD1B	A6NHY2	528 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843		A8MUA0	341 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843		A8MUI8	341 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	MAGEB17	A8MXT2	336 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	PCDH17	O14917	1159 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	KLHL2	O95198	593 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	INHBA	P08476	426 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	FAM153B	P0C7A2	387 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	PCNA	P12004	261 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	RNH1	P13489	461 aa	Known RBP	12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	GFAP	P14136	432 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	MSH2	P43246	934 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	HNRNPF	P52597	415 aa	Known RBP	12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	OR4D2	P58180	307 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	STXBP1	P61764	594 aa	Known RBP	12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	SKP1	P63208	163 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	ARG2	P78540	354 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	SRSF11	Q05519	484 aa	Known RBP	12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	ZNF33B	Q06732	778 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	ACTN3	Q08043	901 aa	Predicted RBP	12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	RUNX2	Q13950	521 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	ZNF169	Q14929	603 aa	Predicted RBP	12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	NR6A1	Q15406	480 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	PFKFB4	Q16877	469 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	FAM83E	Q2M2I3	478 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	FAM153C	Q494X1	144 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	CRB2	Q5IJ48	1285 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	CEP128	Q6ZU80	1094 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	CYP4X1	Q8N118	509 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	CEP112	Q8N8E3	955 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	FAM47B	Q8NA70	645 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	GALNT11	Q8NCW6	608 aa		12.49	□□□□□ -0.41
RNF4-215	ENST00000511843	PLPP5	Q8NEB5	264 aa		12.49	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms