RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 UAP1L1Q3KQV9 507 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 AMZ1Q400G9 498 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 TECRLQ5HYJ1 363 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 MACC1Q6ZN28 852 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 OR4E2Q8NGC2 313 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 RP9Q8TA86 221 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 RORBQ92753 470 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 PROX1Q92786 737 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 SORT1Q99523 831 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 SMURF2Q9HAU4 748 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 SPAG4Q9NPE6 437 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 MKS1Q9NXB0 559 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 USP36Q9P275 1121 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 TRBV5-4A0A0C4DH59 114 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 GSAPA4D1B5 854 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ISM1B1AKI9 464 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 BCAT2O15382 392 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ANXA5P08758 320 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 AOAHP28039 575 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 FMO3P31513 532 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 UQCRC1P31930 480 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 MASP1P48740 699 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ACADVLP49748 655 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 PLA2G16P53816 162 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ACAP2Q15057 778 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ALG11Q2TAA5 492 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 PIGGQ5H8A4 983 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 TCEAL6Q6IPX3 200 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 EFL1Q7Z2Z2 1120 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ADAMTSL2Q86TH1 951 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ARMC8Q8IUR7 673 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 PHC2Q8IXK0 858 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 OR5H6Q8NGV6 325 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 TRUB1Q8WWH5 349 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 TANKQ92844 425 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 TCEAL3Q969E4 200 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 MAP6Q96JE9 813 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 GFM1Q96RP9 751 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ACTR8Q9H981 624 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 TM9SF3Q9HD45 589 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 TMEM74BQ9NUR3 256 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 PRPF19Q9UMS4 504 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 SLC22A14Q9Y267 594 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ARID1AO14497 2285 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 FAM186AA6NE01 2351 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 SNTNA6NMZ2 147 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 BCAS2O75934 225 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 IPO13O94829 963 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 EML2O95834 649 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 SLC16A8O95907 504 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 TNFP01375 233 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 RPS9P46781 194 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 PRLHRP49683 370 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 VASPP50552 380 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 IFITM3Q01628 133 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ALDH6A1Q02252 535 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 STX5Q13190 355 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 FXNQ16595 210 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 CYP27C1Q4G0S4 372 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 RABL3Q5HYI8 236 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ARMC4Q5T2S8 1044 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ANKRD34AQ69YU3 496 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 CCBE1Q6UXH8 406 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 TIFABQ6ZNK6 161 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 MILR1Q7Z6M3 343 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 TCAIMQ8N3R3 496 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 TMEM102Q8N9M5 508 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 FAM83FQ8NEG4 500 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ZHX1-C8orf76Q96EF9 292 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 TMEM74Q96NL1 305 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 KCTD14Q9BQ13 255 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 C1QTNF1Q9BXJ1 281 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ASPSCR1Q9BZE9 553 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 OPTCQ9UBM4 332 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 TBC1D29Q9UFV1 150 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 MID2Q9UJV3 735 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 RP1P56715 2156 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 CXorf51AA0A1B0GTR3 108 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 METTL12A8MUP2 240 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ARHGEF33A8MVX0 844 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 AP3D1O14617 1153 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 VEGFDO43915 354 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 GPR37L1O60883 481 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 LDLRP01130 860 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 PSMB5P28074 263 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 GGT5P36269 586 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ALDH3B2P48448 385 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 PTPN5P54829 565 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 YBX1P67809 324 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 PTCHD3Q3KNS1 767 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 ANKS6Q68DC2 871 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 FKBP9P1Q75LS8 142 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 TUBGCP3Q96CW5 907 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 EHD3Q9NZN3 535 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 KLF15Q9UIH9 416 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 RAB23Q9ULC3 237 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 USP22Q9UPT9 525 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 PDE10AQ9Y233 779 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 IFT52Q9Y366 437 aa8.34□□□□□ -1.07
LIMCH1-209ENST00000509277 PNMA8CA0A1B0GUJ8 204 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms