RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 WASH6PQ9NQA3 447 aa4.39□□□□□ -1.71
NUP54-206ENST00000508465 HOMER3Q9NSC5 361 aa4.39□□□□□ -1.71
NUP54-206ENST00000508465 HRASLS2Q9NWW9 162 aa4.39□□□□□ -1.71
NUP54-206ENST00000508465 IL1RAPL1Q9NZN1 696 aa4.39□□□□□ -1.71
NUP54-206ENST00000508465 AKAP7Q9P0M2 348 aaPredicted RBP4.39□□□□□ -1.71
NUP54-206ENST00000508465 PDP2Q9P2J9 529 aa4.39□□□□□ -1.71
NUP54-206ENST00000508465 CIDEBQ9UHD4 219 aa4.39□□□□□ -1.71
NUP54-206ENST00000508465 ACSL5Q9ULC5 683 aa4.39□□□□□ -1.71
NUP54-206ENST00000508465 SNX12Q9UMY4 172 aa4.39□□□□□ -1.71
NUP54-206ENST00000508465 RUVBL1Q9Y265 456 aaKnown RBP4.39□□□□□ -1.71
NUP54-206ENST00000508465 ZFYVE26Q68DK2 2539 aa4.39□□□□□ -1.71
NUP54-206ENST00000508465 COL27A1Q8IZC6 1860 aaPredicted RBP4.39□□□□□ -1.71
NUP54-206ENST00000508465 IGLV3-16A0A075B6K0 115 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 TRBV5-4A0A0C4DH59 114 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 HEATR9A2RTY3 570 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 SLC9B1P1A6NJY1 282 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 ERI2A8K979 691 aaKnown RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 AGAP14A8MT82 685 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 PGRMC1O00264 195 aaKnown RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 AKAP10O43572 662 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 KCNJ13O60928 360 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 NDUFS3O75489 264 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 BANF1O75531 89 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 ZNF189O75820 626 aaPredicted RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 VAPBO95292 243 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 TPBGLP0DKB5 382 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 THRAP10827 490 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 FOLR1P15328 257 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 PSMA3P25788 255 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 FMO4P31512 558 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 CCR7P32248 378 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 FOXN2P32314 431 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 PRAMEP78395 509 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 MRPS25P82663 173 aaKnown RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 DMPKQ09013 629 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 PIN1Q13526 163 aaPredicted RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 TRA2AQ13595 282 aaKnown RBP eCLIP4.38□□□□□ -1.71
NUP54-206ENST00000508465 DYRK1AQ13627 763 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 CD300EQ496F6 205 aaPredicted RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 ZNF658BQ4V348 819 aaPredicted RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 SOWAHCQ53LP3 525 aaPredicted RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 FASTKD1Q53R41 847 aaKnown RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 ZNF789Q5FWF6 425 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 PCID2Q5JVF3 399 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 DCAF12Q5T6F0 453 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 KRTAP5-11Q6L8G4 156 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 CASC4Q6P4E1 433 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 CCDC137Q6PK04 289 aaKnown RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 C4orf22Q6V702 233 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 ZNF782Q6ZMW2 699 aaPredicted RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 LHFPL2Q6ZUX7 228 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 TIPARPQ7Z3E1 657 aaKnown RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 KLHL7Q8IXQ5 586 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 KRT222Q8N1A0 295 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 RASGEF1CQ8N431 466 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 OTUD6BQ8N6M0 293 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 BMPERQ8N8U9 685 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 PPHLN1Q8NEY8 458 aaKnown RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 OR5AR1Q8NGP9 310 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 HM13Q8TCT9 377 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 LKAAEAR1Q8TD35 194 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 UBE2Q2Q8WVN8 375 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 LCN9Q8WX39 176 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 ELMO1Q92556 727 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 ANP32BQ92688 251 aaKnown RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 TFGQ92734 400 aaPredicted RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 RGMAQ96B86 450 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 TMEM159Q96B96 161 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 FAM136AQ96C01 138 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 ZDHHC12Q96GR4 267 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 LINC00615Q96LM1 132 aaPredicted RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 OR6C1Q96RD1 312 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 RANBP9Q96S59 729 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 CCNL2Q96S94 520 aaPredicted RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 TTC1Q99614 292 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 MAP3K3Q99759 626 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 HGH1Q9BTY7 390 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 QRSL1Q9H0R6 528 aaKnown RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 OR52A5Q9H2C5 316 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 SRMSQ9H3Y6 488 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 STN1Q9H668 368 aaKnown RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 MANSC1Q9H8J5 431 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 COG4Q9H9E3 785 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 AKIRIN1Q9H9L7 192 aaPredicted RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 UCK1Q9HA47 277 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 SMOXQ9NWM0 555 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 BFARQ9NZS9 450 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 GALPQ9UBC7 116 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 SLC24A2Q9UI40 661 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 PLAGL1Q9UM63 463 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 TDRKHQ9Y2W6 561 aaKnown RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 PCDHGA7Q9Y5G6 932 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 COMMD10Q9Y6G5 202 aa4.38□□□□□ -1.71
NUP54-206ENST00000508465 ZFC3H1O60293 1989 aaKnown RBP4.38□□□□□ -1.71
NUP54-206ENST00000508465 PIEZO2Q9H5I5 2752 aa4.37□□□□□ -1.71
NUP54-206ENST00000508465 SCN8AQ9UQD0 1980 aa4.37□□□□□ -1.71
NUP54-206ENST00000508465 LOC101059948A0A1B0GTJ6 334 aa4.37□□□□□ -1.71
NUP54-206ENST00000508465 GSAPA4D1B5 854 aa4.37□□□□□ -1.71
NUP54-206ENST00000508465 KRT87PA6NCN2 255 aa4.37□□□□□ -1.71
NUP54-206ENST00000508465 LILRA5A6NI73 299 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms