RNA–Protein interactions for RNA: ENST00000507247.5

RNF4-208, Transcript of ring finger protein 4, humanhuman

TSL 1 (best)

Gene RNF4, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-208ENST00000507247 TXNDC9O14530 226 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 VPS4BO75351 444 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 SEC22BO75396 215 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 FGF5P12034 268 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 IL1RNP18510 177 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 SDHBP21912 280 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 BSGP35613 385 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 TSPAN7P41732 249 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 RAP1GDS1P52306 607 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 ARFIP2P53365 341 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 RPL38P63173 70 aaKnown RBP13.48□□□□□ -0.25
RNF4-208ENST00000507247 RAE1P78406 368 aaKnown RBP13.48□□□□□ -0.25
RNF4-208ENST00000507247 TARDBPQ13148 414 aaKnown RBP eCLIP13.48□□□□□ -0.25
RNF4-208ENST00000507247 GRM7Q14831 915 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 ATP6AP1LQ52LC2 224 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 TMEM35AQ53FP2 167 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 TMEM198Q66K66 360 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 NXNQ6DKJ4 435 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 TLDC1Q6P9B6 456 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 TRIM40Q6P9F5 258 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 ZNF793Q6ZN11 406 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 ACAD11Q709F0 780 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 COMMD6Q7Z4G1 85 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 PIGWQ7Z7B1 504 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 TMPRSS12Q86WS5 348 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 GPR135Q8IZ08 494 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 AMER3Q8N944 861 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 TTC29Q8NA56 475 aaPredicted RBP13.48□□□□□ -0.25
RNF4-208ENST00000507247 STON2Q8WXE9 905 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 RGMAQ96B86 450 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 QRFPRQ96P65 431 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 TEFMQ96QE5 360 aaKnown RBP13.48□□□□□ -0.25
RNF4-208ENST00000507247 C17orf62Q9BQA9 187 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 C1orf50Q9BV19 199 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 TCF7L2Q9NQB0 619 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 FBXO8Q9NRD0 319 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 NMRK1Q9NWW6 199 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 SERTAD3Q9UJW9 196 aa13.48□□□□□ -0.25
RNF4-208ENST00000507247 POLR3HQ9Y535 204 aaPredicted RBP13.48□□□□□ -0.25
RNF4-208ENST00000507247 HYKKA2RU49 373 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 URADA6NGE7 173 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 ZNF749O43361 778 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 FOXS1O43638 330 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 EEDO75530 441 aaKnown RBP13.47□□□□□ -0.25
RNF4-208ENST00000507247 KLHL18O94889 574 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 ALDOCP09972 364 aaKnown RBP13.47□□□□□ -0.25
RNF4-208ENST00000507247 ALOX12P18054 663 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 LBPP18428 481 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 ACSM2AQ08AH3 577 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 DEFB134Q4QY38 66 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 SPIN4Q56A73 249 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 C3orf38Q5JPI3 329 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 ACSM2BQ68CK6 577 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 OR4C11Q6IEV9 310 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 OGFOD2Q6N063 350 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 PWWP2BQ6NUJ5 590 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 ABHD13Q7L211 337 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 PPP1R3BQ86XI6 285 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 PDSS2Q86YH6 399 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 FNDC5Q8NAU1 212 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 OR8K5Q8NH50 307 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 CEP70Q8NHQ1 597 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 MARK4Q96L34 752 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 FCRL1Q96LA6 429 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 KCNC2Q96PR1 638 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 CENPKQ9BS16 269 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 CCDC28BQ9BUN5 200 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 EBPLQ9BY08 206 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 CUTCQ9NTM9 273 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 SLC39A1Q9NY26 324 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 AKAP7Q9P0M2 348 aaPredicted RBP13.47□□□□□ -0.25
RNF4-208ENST00000507247 DLGAP4Q9Y2H0 992 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 SLC22A7Q9Y694 548 aa13.47□□□□□ -0.25
RNF4-208ENST00000507247 E9PBE3 544 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 PLD2O14939 933 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 POLR1CO15160 346 aaPredicted RBP13.46□□□□□ -0.25
RNF4-208ENST00000507247 KLHL41O60662 606 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 DNAJB6O75190 326 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 GBAP04062 536 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 KLK1P06870 262 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 ATP5A1P25705 553 aaKnown RBP13.46□□□□□ -0.25
RNF4-208ENST00000507247 CERS1P27544 350 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 TPP2P29144 1249 aaPredicted RBP13.46□□□□□ -0.25
RNF4-208ENST00000507247 TIA1P31483 386 aaKnown RBP eCLIP13.46□□□□□ -0.255e-7■■■■□ 23.6
RNF4-208ENST00000507247 SSR2P43308 183 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 ARFIP1P53367 373 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 MAPK10P53779 464 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 EMP3P54852 163 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 ERVK-8P63133 956 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 BTN3A2P78410 334 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 EMX2Q04743 252 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 EIF3IQ13347 325 aaKnown RBP13.46□□□□□ -0.25
RNF4-208ENST00000507247 IL11RAQ14626 422 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 NDUFA9Q16795 377 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 MUM1Q2TAK8 710 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 SMU1Q2TAY7 513 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 GARNL3Q5VVW2 1013 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 FOXR1Q6PIV2 292 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 RIPOR1Q6ZS17 1223 aa13.46□□□□□ -0.25
RNF4-208ENST00000507247 TMPRSS7Q7RTY8 843 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms