RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 ADAMTS9Q9P2N4 1935 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 H0YGG7 62 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 KHNYNO15037 678 aaKnown RBP20.62■□□□□ 0.89
SMC4-221ENST00000489573 B4GAT1O43505 415 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 PNLIPP16233 465 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 ENGP17813 658 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 GSTM5P46439 218 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 TAS2R50P59544 299 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 ARF3P61204 181 aaPredicted RBP20.62■□□□□ 0.89
SMC4-221ENST00000489573 PSME3P61289 254 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 SRSF11Q05519 484 aaKnown RBP20.62■□□□□ 0.89
SMC4-221ENST00000489573 PGS1Q32NB8 556 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 TRMT5Q32P41 509 aaKnown RBP20.62■□□□□ 0.89
SMC4-221ENST00000489573 ABHD17CQ6PCB6 329 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 BNC2Q6ZN30 1099 aaPredicted RBP20.62■□□□□ 0.89
SMC4-221ENST00000489573 DPP10Q8N608 796 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 EID2Q8N6I1 236 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 Q8N9G6 341 aaPredicted RBP20.62■□□□□ 0.89
SMC4-221ENST00000489573 TEFMQ96QE5 360 aaKnown RBP20.62■□□□□ 0.89
SMC4-221ENST00000489573 OR52E6Q96RD3 313 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 TBCDQ9BTW9 1192 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 ZMYND15Q9H091 742 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 WBP11Q9Y2W2 641 aaKnown RBP20.62■□□□□ 0.89
SMC4-221ENST00000489573 PCDHGA7Q9Y5G6 932 aa20.62■□□□□ 0.89
SMC4-221ENST00000489573 LOC105369274A0A096LPK9 316 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 A0A0A6YYD5 115 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 LY6G6EA0A0G2JKS1 128 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 A0A0G2JN53 185 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 LOC102723532A0A0G2JNH3 316 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 C4orf51C9J302 202 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 P2RX6O15547 441 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 RPL3P39023 403 aaKnown RBP20.61■□□□□ 0.89
SMC4-221ENST00000489573 KIR3DL1P43629 444 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 TSFMP43897 325 aaKnown RBP20.61■□□□□ 0.89
SMC4-221ENST00000489573 FOXM1Q08050 763 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 MAPKAPK3Q16644 382 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 AMZ1Q400G9 498 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 ZC3H12BQ5HYM0 836 aaKnown RBP20.61■□□□□ 0.89
SMC4-221ENST00000489573 FAM71E1Q6IPT2 247 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 C8orf82Q6P1X6 216 aaPredicted RBP20.61■□□□□ 0.89
SMC4-221ENST00000489573 MSANTD1Q6ZTZ1 278 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 SPRED1Q7Z699 444 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 SCUBE1Q8IWY4 988 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 ULK2Q8IYT8 1036 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 OR4N4Q8N0Y3 316 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 ZNF655Q8N720 491 aaPredicted RBP20.61■□□□□ 0.89
SMC4-221ENST00000489573 OR7A2PQ8NGA2 310 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 TCTN2Q96GX1 697 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 CLPTM1LQ96KA5 538 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 PRPF18Q99633 342 aaKnown RBP20.61■□□□□ 0.89
SMC4-221ENST00000489573 REEP4Q9H6H4 257 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 IL1RL2Q9HB29 575 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 FAM60AQ9NP50 221 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 ATP6V1HQ9UI12 483 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 SEC23IPQ9Y6Y8 1000 aaKnown RBP20.61■□□□□ 0.89
SMC4-221ENST00000489573 U3KQA8 63 aa20.61■□□□□ 0.89
SMC4-221ENST00000489573 A0A088AWK7 358 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 URADA6NGE7 173 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 FXYD1O00168 92 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 KIF1CO43896 1103 aaKnown RBP20.6■□□□□ 0.89
SMC4-221ENST00000489573 SH3BP5O60239 455 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 NPPAP01160 153 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 IL3P08700 152 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 TRA2BP62995 288 aaKnown RBP20.6■□□□□ 0.89
SMC4-221ENST00000489573 C2orf80Q0P641 193 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 ZNF793Q6ZN11 406 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 R3HCC1LQ7Z5L2 792 aaKnown RBP20.6■□□□□ 0.89
SMC4-221ENST00000489573 CAMKMTQ7Z624 323 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 DHDDSQ86SQ9 333 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 GPR180Q86V85 440 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 PLXDC1Q8IUK5 500 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 CARFQ8N187 725 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 MINDY1Q8N5J2 469 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 KCT2Q8NC54 265 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 LRRC58Q96CX6 371 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 HOPXQ9BPY8 73 aaPredicted RBP20.6■□□□□ 0.89
SMC4-221ENST00000489573 CCDC3Q9BQI4 270 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 RMND5AQ9H871 391 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 PRDM7Q9NQW5 492 aa20.6■□□□□ 0.89
SMC4-221ENST00000489573 TMPRSS11DO60235 418 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 ZNF888P0CJ79 500 aaPredicted RBP20.59■□□□□ 0.89
SMC4-221ENST00000489573 HIST1H1TP22492 207 aaPredicted RBP20.59■□□□□ 0.89
SMC4-221ENST00000489573 ATP5A1P25705 553 aaKnown RBP20.59■□□□□ 0.89
SMC4-221ENST00000489573 CD1CP29017 333 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 ATXN3P54252 364 aaPredicted RBP20.59■□□□□ 0.89
SMC4-221ENST00000489573 PHC1P78364 1004 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 MANEAQ5SRI9 462 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 CPTPQ5TA50 214 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 LAIR1Q6GTX8 287 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 OR4F3Q6IEY1 312 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 TCEAL6Q6IPX3 200 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 PRMT9Q6P2P2 845 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 GUSBP11Q6P575 273 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 ZCCHC7Q8N3Z6 543 aaKnown RBP20.59■□□□□ 0.89
SMC4-221ENST00000489573 CSNK1A1LQ8N752 337 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 OR8J2Q8NGG1 315 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 TCEAL3Q969E4 200 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 MTERF3Q96E29 417 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 CDRT15Q96T59 188 aa20.59■□□□□ 0.89
SMC4-221ENST00000489573 GPATCH1Q9BRR8 931 aaKnown RBP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms