RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 CHRNA1P02708 482 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 RFC2P35250 354 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 EIF2S3P41091 472 aaKnown RBP15.88■□□□□ 0.13
COL7A1-210ENST00000487017 OR4K1Q8NGD4 311 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 B3GNT4Q9C0J1 378 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 SLC28A3Q9HAS3 691 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 ERVK-18Q9QC07 812 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 B4GALT6Q9UBX8 382 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 A0A0J9YVX5 310 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 ISPDA4D126 451 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 C5orf51A6NDU8 294 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 OR2AT4A6NND4 320 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 COQ9O75208 318 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 F8A1P23610 371 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 VMACQ2NL98 169 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 ZNF670-ZNF695F2Z2N8 137 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 KMOO15229 486 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 CAPN5O15484 640 aaPredicted RBP15.88■□□□□ 0.13
COL7A1-210ENST00000487017 FDXRP22570 491 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 PREPP48147 710 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 BLKP51451 505 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 TAS2R43P59537 309 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 PIGFQ07326 219 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 CRHR2Q13324 411 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 ZNF366Q8N895 744 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 GNPDA2Q8TDQ7 276 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 OSTF1Q92882 214 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 SLC25A36Q96CQ1 311 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 STRA6Q9BX79 667 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 SLC6A15Q9H2J7 730 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 CXCR1P25024 350 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 RBM34P42696 430 aaKnown RBP15.88■□□□□ 0.13
COL7A1-210ENST00000487017 APLP1P51693 650 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 PLCZ1Q86YW0 608 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 DCUN1D3Q8IWE4 304 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 SLC22A15Q8IZD6 547 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 DOHHQ9BU89 302 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 METTL21EPA6NDL7 271 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 MMP20O60882 483 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 STATHP02808 62 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 ZNF20P17024 532 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 CCKBRP32239 447 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 OR3A3P47888 321 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 OR3A2P47893 321 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 EIF5AP63241 154 aaKnown RBP15.88■□□□□ 0.13
COL7A1-210ENST00000487017 RASGEF1BQ0VAM2 473 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 HNRNPA0Q13151 305 aaKnown RBP15.88■□□□□ 0.13
COL7A1-210ENST00000487017 KANK2Q63ZY3 851 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 ZNF783Q6ZMS7 281 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 MSANTD1Q6ZTZ1 278 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 YIPF7Q8N8F6 280 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 IRF2BPLQ9H1B7 796 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 OR51I1Q9H343 314 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 NLGN3Q9NZ94 848 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 PHRF1Q9P1Y6 1649 aaKnown RBP15.87■□□□□ 0.13
COL7A1-210ENST00000487017 OR7A10O76100 309 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 CSN2P05814 226 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 TFPTP0C1Z6 253 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 PTGS2P35354 604 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 CTSOP43234 321 aaPredicted RBP15.87■□□□□ 0.13
COL7A1-210ENST00000487017 PON3Q15166 354 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 ZNF181Q2M3W8 571 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 COQ5Q5HYK3 327 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 C10orf62Q5T681 223 aaPredicted RBP15.87■□□□□ 0.13
COL7A1-210ENST00000487017 GPRIN1Q7Z2K8 1008 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 CHCHD4Q8N4Q1 142 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 RIT1Q92963 219 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 DGAT2Q96PD7 388 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 PCDHB11Q9Y5F2 797 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 SLC16A5O15375 505 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 RPP14O95059 124 aaKnown RBP15.87■□□□□ 0.13
COL7A1-210ENST00000487017 PGGT1BP53609 377 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 LSAMPQ13449 338 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 TRAM2Q15035 370 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 IFNL1Q8IU54 200 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 ACOT12Q8WYK0 555 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 HERC2P3Q9BVR0 1158 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 RETREG1Q9H6L5 497 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 SMOXQ9NWM0 555 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 PAK1IP1Q9NWT1 392 aaPredicted RBP15.87■□□□□ 0.13
COL7A1-210ENST00000487017 KDM3BQ7LBC6 1761 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 CCDC85CA6NKD9 419 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 AOC2O75106 756 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 RLN2P04090 185 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 GABARAPL2P60520 117 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 CLDN10P78369 228 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 RING1Q06587 406 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 SNX29P2Q8IUI4 249 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 ZNF431Q8TF32 576 aaPredicted RBP15.87■□□□□ 0.13
COL7A1-210ENST00000487017 FUZQ9BT04 418 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 ASPNQ9BXN1 380 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 PCDHGB6Q9Y5F9 930 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 BCKDHAP12694 445 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 SUSD1Q6UWL2 747 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 PHOX2BQ99453 314 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 SPEF1Q9Y4P9 236 aa15.87■□□□□ 0.13
COL7A1-210ENST00000487017 SNAI1O95863 264 aaPredicted RBP15.86■□□□□ 0.13
COL7A1-210ENST00000487017 PRLP01236 227 aa15.86■□□□□ 0.13
COL7A1-210ENST00000487017 MPC1LP0DKB6 136 aa15.86■□□□□ 0.13
COL7A1-210ENST00000487017 ACRV1P26436 265 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms