RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 OR6B1O95007 311 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 C9P02748 559 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 EEF2P13639 858 aaKnown RBP2.37□□□□□ -2.03
VPS50-216ENST00000484954 MYL6BP14649 208 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 SSTR1P30872 391 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 CHRNA3P32297 505 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 FEN1P39748 380 aaKnown RBP2.37□□□□□ -2.03
VPS50-216ENST00000484954 CASP2P42575 452 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 EVCP57679 992 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 SULT2A1Q06520 285 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 KYNUQ16719 465 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 Q1RN00 199 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 LRRC37A5PQ49AS3 106 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 TEX35Q5T0J7 233 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 ATAD3CQ5T2N8 411 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 EMBQ6PCB8 327 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 BAIAP2L2Q6UXY1 529 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 Q71RC1 249 aaPredicted RBP2.37□□□□□ -2.03
VPS50-216ENST00000484954 TRMT11Q7Z4G4 463 aaKnown RBP2.37□□□□□ -2.03
VPS50-216ENST00000484954 HIPK1Q86Z02 1210 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 CROCCP3Q8IVE0 287 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 CD99L2Q8TCZ2 262 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 MRPS27Q92552 414 aaKnown RBP2.37□□□□□ -2.03
VPS50-216ENST00000484954 CHMP4AQ9BY43 222 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 C5orf66Q9H5L9 145 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 AGTPBP1Q9UPW5 1226 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 SATB2Q9UPW6 733 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 ZNF256Q9Y2P7 627 aaPredicted RBP2.37□□□□□ -2.03
VPS50-216ENST00000484954 NAALAD2Q9Y3Q0 740 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 KLK4Q9Y5K2 254 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 LIPGQ9Y5X9 500 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 COL16A1Q07092 1604 aaPredicted RBP2.37□□□□□ -2.03
VPS50-216ENST00000484954 RNF123Q5XPI4 1314 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 TDRD6O60522 2096 aaKnown RBP2.37□□□□□ -2.03
VPS50-216ENST00000484954 TRBV5-4A0A0C4DH59 114 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 TRIM49BA6NDI0 452 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 ANHXE9PGG2 379 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 IGHG3P01860 377 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 MT-ND1P03886 318 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 HCKP08631 526 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 DLATP10515 647 aaKnown RBP2.36□□□□□ -2.03
VPS50-216ENST00000484954 ZNF19P17023 458 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 LBPP18428 481 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 RIDAP52758 137 aaKnown RBP2.36□□□□□ -2.03
VPS50-216ENST00000484954 MFAP3P55082 362 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 IL10RBQ08334 325 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 CAMK2DQ13557 499 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 RUNX3Q13761 415 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 NHLRC3Q5JS37 347 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 KRBOX4Q5JUW0 171 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 FHL5Q5TD97 284 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 C16orf54Q6UWD8 224 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 PRSS35Q8N3Z0 413 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 RANBP9Q96S59 729 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 NAA11Q9BSU3 229 aaPredicted RBP2.36□□□□□ -2.03
VPS50-216ENST00000484954 STRADBQ9C0K7 418 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 DEPPQ9NTK1 212 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 ANKEF1Q9NU02 776 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 ABCD2Q9UBJ2 740 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 SLC12A6Q9UHW9 1150 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 AUP1Q9Y679 476 aa2.36□□□□□ -2.03
VPS50-216ENST00000484954 TRAV18A0A075B6X5 111 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 IQCMA0A1B0GVH7 501 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 INPP4BO15327 924 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 P4HA2O15460 535 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 GGPS1O95749 300 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 PENKP01210 267 aaPredicted RBP2.35□□□□□ -2.03
VPS50-216ENST00000484954 QDPRP09417 244 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 GIG44P09565 113 aaPredicted RBP2.35□□□□□ -2.03
VPS50-216ENST00000484954 PSMB4P28070 264 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 FCGR2BP31994 310 aaPredicted RBP2.35□□□□□ -2.03
VPS50-216ENST00000484954 FCGR2CP31995 323 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 ELK3P41970 407 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 SLC1A4P43007 532 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 PRPF4BQ13523 1007 aaKnown RBP2.35□□□□□ -2.03
VPS50-216ENST00000484954 GCKRQ14397 625 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 GRB14Q14449 540 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 POM121L1PQ3SYA9 428 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 LRRC73Q5JTD7 316 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 ZNF506Q5JVG8 444 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 CCDC185Q8N715 623 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 KIAA1524Q8TCG1 905 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 SERAC1Q96JX3 654 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 ZIM3Q96PE6 472 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 TNFRSF13CQ96RJ3 184 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 PCDHB18PQ96TA0 734 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 RBM24Q9BX46 236 aaKnown RBP2.35□□□□□ -2.03
VPS50-216ENST00000484954 KCNK13Q9HB14 408 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 MRGBPQ9NV56 204 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 EXOC1Q9NV70 894 aa2.35□□□□□ -2.03
VPS50-216ENST00000484954 RUVBL2Q9Y230 463 aaKnown RBP2.35□□□□□ -2.03
VPS50-216ENST00000484954 POGZQ7Z3K3 1410 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 LOC390937A0A1W2PQ73 354 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 FAM168BA1KXE4 195 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 FAM86B1E9PN63 330 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 PGRMC2O15173 223 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 TBX10O75333 385 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 ZNF253O75346 499 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 LUC7L3O95232 432 aaKnown RBP2.34□□□□□ -2.03
VPS50-216ENST00000484954 ANGPTL1O95841 491 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms