RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 SRSF11Q05519 484 aaKnown RBP9.68□□□□□ -0.86
USP39-215ENST00000481409 ZFP36L1Q07352 338 aaKnown RBP9.68□□□□□ -0.86
USP39-215ENST00000481409 CYP4F3Q08477 520 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 SF3A3Q12874 501 aaKnown RBP eCLIP9.68□□□□□ -0.86
USP39-215ENST00000481409 BNIP1Q12981 228 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 CYLC2Q14093 348 aaPredicted RBP9.68□□□□□ -0.86
USP39-215ENST00000481409 SLC9A5Q14940 896 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 HEPACAMQ14CZ8 416 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 LACTB2Q53H82 288 aaPredicted RBP9.68□□□□□ -0.86
USP39-215ENST00000481409 TOR1AIP1Q5JTV8 583 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 NKAIN2Q5VXU1 208 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 TMEM198Q66K66 360 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 TMEM214Q6NUQ4 689 aaKnown RBP9.68□□□□□ -0.86
USP39-215ENST00000481409 ABHD17CQ6PCB6 329 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 CAMKMTQ7Z624 323 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 FAM20CQ8IXL6 584 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 CACTIN-AS1Q8N1I8 211 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 LIX1Q8N485 282 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 C1orf52Q8N6N3 182 aaKnown RBP9.68□□□□□ -0.86
USP39-215ENST00000481409 CSNK1A1LQ8N752 337 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 TTC29Q8NA56 475 aaPredicted RBP9.68□□□□□ -0.86
USP39-215ENST00000481409 SMIM10Q96HG1 83 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 NSL1Q96IY1 281 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 FCRL4Q96PJ5 515 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 SERINC2Q96SA4 455 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 FAIM2Q9BWQ8 316 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 MRPL1Q9BYD6 325 aaKnown RBP9.68□□□□□ -0.86
USP39-215ENST00000481409 C1orf21Q9H246 121 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 OR51B5Q9H339 312 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 COPS7BQ9H9Q2 264 aaPredicted RBP9.68□□□□□ -0.86
USP39-215ENST00000481409 ATAD3AQ9NVI7 634 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 EHD3Q9NZN3 535 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 AKAP7Q9P0M2 348 aaPredicted RBP9.68□□□□□ -0.86
USP39-215ENST00000481409 TAGLN3Q9UI15 199 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 POLR3HQ9Y535 204 aaPredicted RBP9.68□□□□□ -0.86
USP39-215ENST00000481409 CACNA1HO95180 2353 aa9.68□□□□□ -0.86
USP39-215ENST00000481409 GOLGA4Q13439 2230 aaKnown RBP9.67□□□□□ -0.86
USP39-215ENST00000481409 A0A0A6YYD5 115 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 IGHV5-10-1A0A0J9YXX1 117 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 GNG14A0A1W2PPG7 69 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 SYNDIG1LA6NDD5 238 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 DLL1O00548 723 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 ANKRD28O15084 1053 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 CFLARO15519 480 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 ERI3O43414 337 aaKnown RBP9.67□□□□□ -0.86
USP39-215ENST00000481409 SH3BP5O60239 455 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 RFPL3O75679 317 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 UNC5CO95185 931 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 SERPIND1P05546 499 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 SNRPB2P08579 225 aaKnown RBP9.67□□□□□ -0.86
USP39-215ENST00000481409 HBQ1P09105 142 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 ESRRAP11474 423 aaPredicted RBP9.67□□□□□ -0.86
USP39-215ENST00000481409 DRD2P14416 443 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 PVRP15151 417 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 ALOX12P18054 663 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 HIST1H1TP22492 207 aaPredicted RBP9.67□□□□□ -0.86
USP39-215ENST00000481409 HNRNPH1P31943 449 aaKnown RBP9.67□□□□□ -0.86
USP39-215ENST00000481409 HPCAL1P37235 193 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 SSR2P43308 183 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 HNRNPFP52597 415 aaKnown RBP9.67□□□□□ -0.86
USP39-215ENST00000481409 MAPK12P53778 367 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 DIO3P55073 304 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 CYP4F2P78329 520 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 RAE1P78406 368 aaKnown RBP9.67□□□□□ -0.86
USP39-215ENST00000481409 RCAN2Q14206 197 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 IL11RAQ14626 422 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 MUM1Q2TAK8 710 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 WASHC2DQ5SRD0 308 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 CCNYL2Q5T2Q4 361 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 BLOC1S3Q6QNY0 202 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 USP53Q70EK8 1073 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 PIP4P1Q86T03 277 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 PLD3Q8IV08 490 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 SLITRK4Q8IW52 837 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 GPR135Q8IZ08 494 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 SAMD14Q8IZD0 417 aaPredicted RBP9.67□□□□□ -0.86
USP39-215ENST00000481409 TMEM132CQ8N3T6 1108 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 PCYOX1LQ8NBM8 494 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 VPS37AQ8NEZ2 397 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.67□□□□□ -0.86
USP39-215ENST00000481409 PROKR1Q8TCW9 393 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 UTP15Q8TED0 518 aaKnown RBP9.67□□□□□ -0.86
USP39-215ENST00000481409 PRR11Q96HE9 360 aaPredicted RBP9.67□□□□□ -0.86
USP39-215ENST00000481409 F2RL3Q96RI0 385 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 NUDT22Q9BRQ3 303 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 RTKNQ9BST9 563 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 C1orf50Q9BV19 199 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 ZNF717Q9BY31 904 aaPredicted RBP9.67□□□□□ -0.86
USP39-215ENST00000481409 CLMPQ9H6B4 373 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 LYRM4Q9HD34 91 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 FAM60AQ9NP50 221 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 PARD6AQ9NPB6 346 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 PRDM7Q9NQW5 492 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 PHF11Q9UIL8 331 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 CDC14AQ9UNH5 594 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 SRPK3Q9UPE1 567 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 KLHL20Q9Y2M5 609 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 NDUFAF1Q9Y375 327 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 SPACA6W5XKT8 324 aa9.67□□□□□ -0.86
USP39-215ENST00000481409 A0A0C4DFX4 3053 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms