RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SLC24A5Q71RS6 500 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 C5orf24Q7Z6I8 188 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 ZC3H3Q8IXZ2 948 aaKnown RBP4.59□□□□□ -1.67
UPF3B-203ENST00000478840 CNPY4Q8N129 248 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 ZNF843Q8N446 348 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 MAB21L3Q8N8X9 362 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 SLC37A3Q8NCC5 494 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 TRPV3Q8NET8 790 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 CD99L2Q8TCZ2 262 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 CHURC1Q8WUH1 139 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 CD101Q93033 1021 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 ESAMQ96AP7 390 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 NXPE2Q96DL1 559 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 LURAP1Q96LR2 239 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 C10orf90Q96M02 699 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 GPR137Q96N19 417 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 FTHL17Q9BXU8 183 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 KIAA1210Q9ULL0 1709 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 AURKCQ9UQB9 309 aa4.59□□□□□ -1.67
UPF3B-203ENST00000478840 CCDC162PA2VCL2 907 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 KLF11O14901 512 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 TEX28O15482 410 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 SMPD2O60906 423 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 CPNE6O95741 557 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 PTBP3O95758 552 aaKnown RBP4.58□□□□□ -1.68
UPF3B-203ENST00000478840 EPOP01588 193 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 MT-ND2P03891 347 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 CHRNGP07510 517 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 SFTPBP07988 381 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 CT45A8P0DMV1 189 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 CT45A9P0DMV2 189 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 ODC1P11926 461 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 CHRNA3P32297 505 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 ACAA2P42765 397 aaKnown RBP4.58□□□□□ -1.68
UPF3B-203ENST00000478840 CCR4P51679 360 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 TKTL1P51854 596 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 KCNJ10P78508 379 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 MFGE8Q08431 387 aaPredicted RBP4.58□□□□□ -1.68
UPF3B-203ENST00000478840 ITGA9Q13797 1035 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 CEACAM7Q14002 265 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 SPHARQ15513 63 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 FASTKD1Q53R41 847 aaKnown RBP4.58□□□□□ -1.68
UPF3B-203ENST00000478840 CT45A2Q5DJT8 189 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 C9orf50Q5SZB4 431 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 GALNT17Q6IS24 598 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 SPSB3Q6PJ21 355 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 OLFM4Q6UX06 510 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 ISLR2Q6UXK2 745 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 MACC1Q6ZN28 852 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 ZNF771Q7L3S4 317 aaPredicted RBP4.58□□□□□ -1.68
UPF3B-203ENST00000478840 FCRLAQ7L513 359 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 HSCBQ8IWL3 235 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 CIARTQ8N365 385 aaPredicted RBP4.58□□□□□ -1.68
UPF3B-203ENST00000478840 RFLNBQ8N5W9 214 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 CCDC110Q8TBZ0 833 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 SPATA18Q8TC71 538 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 DQX1Q8TE96 717 aaKnown RBP4.58□□□□□ -1.68
UPF3B-203ENST00000478840 SCARB1Q8WTV0 552 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 UBTD2Q8WUN7 234 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 APOBEC4Q8WW27 367 aaKnown RBP4.58□□□□□ -1.68
UPF3B-203ENST00000478840 SYAP1Q96A49 352 aaPredicted RBP4.58□□□□□ -1.68
UPF3B-203ENST00000478840 VOPP1Q96AW1 172 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 SSX3Q99909 188 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 PIGQQ9BRB3 760 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 DPEP2Q9H4A9 486 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 VIPAS39Q9H9C1 493 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 NGBQ9NPG2 151 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 INTS9Q9NV88 658 aaKnown RBP4.58□□□□□ -1.68
UPF3B-203ENST00000478840 SOHLH2Q9NX45 425 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 TAAR2Q9P1P5 351 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 EPHA6Q9UF33 1036 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 TEKT2Q9UIF3 430 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 PILRAQ9UKJ1 303 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 EXOC7Q9UPT5 735 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 SATB2Q9UPW6 733 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 NUDCQ9Y266 331 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 NCKAP1Q9Y2A7 1128 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 PCDHGB1Q9Y5G3 927 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 COLEC10Q9Y6Z7 277 aa4.58□□□□□ -1.68
UPF3B-203ENST00000478840 A0A087WUV0 522 aaPredicted RBP4.57□□□□□ -1.68
UPF3B-203ENST00000478840 DENND3A2RUS2 1198 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 A8MVM7 634 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 SNURFLB1AK76 121 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 F8WDY8 70 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 MLNRO43193 412 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 NOL3O60936 208 aaKnown RBP4.57□□□□□ -1.68
UPF3B-203ENST00000478840 LRP3O75074 770 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 ATP6V1G1O75348 118 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 OR6A2O95222 327 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 NADKO95544 446 aaPredicted RBP4.57□□□□□ -1.68
UPF3B-203ENST00000478840 NTN1O95631 604 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 T-ENOLP0DO92 83 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 TNFRSF4P43489 277 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 SLC6A12P48065 614 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 PITPNBP48739 271 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 ZNF131P52739 623 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 KLHL30Q0D2K2 578 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 SGCGQ13326 291 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 TAF1BQ53T94 588 aaPredicted RBP4.57□□□□□ -1.68
UPF3B-203ENST00000478840 WBP2NLQ6ICG8 309 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms