RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 TRPC4Q9UBN4 977 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 ZNF282Q9UDV7 671 aaPredicted RBP11.33□□□□□ -0.6
VPS13D-204ENST00000469054 TRPS1Q9UHF7 1281 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 TCFL5Q9UL49 500 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 PADI2Q9Y2J8 665 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 NAALAD2Q9Y3Q0 740 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 MAP4K5Q9Y4K4 846 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 FRYQ5TBA9 3013 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 SEC16AO15027 2179 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 IGLV3-12A0A075B6K2 115 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 MAGEB17A8MXT2 336 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 H3BQF6 201 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 FOXE1O00358 373 aaPredicted RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 UBFD1O14562 309 aaKnown RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 FFAR3O14843 346 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 NKX2-8O15522 239 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 GPR42O15529 346 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 ERI3O43414 337 aaKnown RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 RDH16O75452 317 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 ESRRBO95718 433 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 B3GALT4O96024 378 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 BPGMP07738 259 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 DHRS4L1P0CG22 281 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 SERPINB4P48594 390 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 PLA2G16P53816 162 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 RPS13P62277 151 aaKnown RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 CXADRP78310 365 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 BTN3A2P78410 334 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 MAT1AQ00266 395 aaKnown RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 OCA2Q04671 838 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 TGM3Q08188 693 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 IFT88Q13099 833 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 MPP2Q14168 576 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 NKG7Q16617 165 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 SYT16Q17RD7 645 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 CRTC2Q53ET0 693 aaPredicted RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 VWA2Q5GFL6 755 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 DEPDC1Q5TB30 811 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 FAM69BQ5VUD6 431 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 FRG2Q64ET8 278 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 TTC19Q6DKK2 380 aaPredicted RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 TRIM40Q6P9F5 258 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 ABHD17CQ6PCB6 329 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 C19orf48Q6RUI8 117 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 CHSY3Q70JA7 882 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 RNF175Q8N4F7 328 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 CDYL2Q8N8U2 506 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 SRFBP1Q8NEF9 429 aaKnown RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 STT3BQ8TCJ2 826 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 AGAP11Q8TF27 550 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 SNRNP27Q8WVK2 155 aaKnown RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 SREK1Q8WXA9 508 aaKnown RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 ARL8AQ96BM9 186 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 MTFMTQ96DP5 389 aaKnown RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 FAR2Q96K12 515 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 CNDP1Q96KN2 507 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 PKNOX2Q96KN3 472 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 FRG2BQ96QU4 278 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 F2RL3Q96RI0 385 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 SPSB2Q99619 263 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 TRMOQ9BU70 441 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 YIPF2Q9BWQ6 316 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 OR51B5Q9H339 312 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 ELOVL6Q9H5J4 265 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 WDR54Q9H977 334 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 CLK4Q9HAZ1 481 aaKnown RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 MID1IP1Q9NPA3 183 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 MKKSQ9NPJ1 570 aaPredicted RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 DMRT3Q9NQL9 472 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 CTSFQ9UBX1 484 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 NXT1Q9UKK6 140 aaKnown RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 PPT2Q9UMR5 302 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 SNX6Q9UNH7 406 aa11.32□□□□□ -0.6
VPS13D-204ENST00000469054 PTRH2Q9Y3E5 179 aaKnown RBP11.32□□□□□ -0.6
VPS13D-204ENST00000469054 A0A088AWK7 358 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 A0A0G2JN53 185 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 TMEM120BA0PK00 339 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 ZNF860A6NHJ4 632 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 C4orf51C9J302 202 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 NPHS1O60500 1241 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 SH3BGRLO75368 114 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 SASH3O75995 380 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 ENO1P06733 434 aaKnown RBP11.31□□□□□ -0.6
VPS13D-204ENST00000469054 ZGLP1P0C6A0 271 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 ZNF10P21506 573 aaPredicted RBP11.31□□□□□ -0.6
VPS13D-204ENST00000469054 PTX3P26022 381 aaPredicted RBP11.31□□□□□ -0.6
VPS13D-204ENST00000469054 CCR10P46092 362 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 SLC18A1P54219 525 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 FOXL2P58012 376 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 ERV3-1Q14264 604 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 SSPNQ14714 243 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 TMEM35AQ53FP2 167 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 SGO1Q5FBB7 561 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 KHDRBS2Q5VWX1 349 aaKnown RBP11.31□□□□□ -0.6
VPS13D-204ENST00000469054 NUDCD3Q8IVD9 361 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 OR5T3Q8NGG3 340 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 OR2Y1Q8NGV0 311 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 OR51Q1Q8NH59 317 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 METTL6Q8TCB7 284 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 SELENOMQ8WWX9 145 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms