RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 DCXRQ7Z4W1 244 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 LINC00523Q86TU6 105 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 MAP7D3Q8IWC1 876 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 CHERPQ8IWX8 916 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 LIX1Q8N485 282 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC44A5Q8NCS7 719 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 FAM71CQ8NEG0 241 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 OIT3Q8WWZ8 545 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 AKAP1Q92667 903 aaKnown RBP eCLIP4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 RAB1CQ92928 201 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 TOP1MTQ969P6 601 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 CEP19Q96LK0 163 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 TSNARE1Q96NA8 513 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 FOXN4Q96NZ1 517 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 PANX3Q96QZ0 392 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 NPY6RQ99463 290 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 CGREF1Q99674 301 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 ALG12Q9BV10 488 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 ABHD6Q9BV23 337 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 ANKRD30AQ9BXX3 1397 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 POTEKPQ9BYX7 375 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 MFFQ9GZY8 342 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 EPHX3Q9H6B9 360 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 AAMDCQ9H7C9 122 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 SRD5A3Q9H8P0 318 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 LMAN1LQ9HAT1 526 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 KCNMB3Q9NPA1 279 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 NT5MQ9NPB1 228 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 MRPL40Q9NQ50 206 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 CHRAC1Q9NRG0 131 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 TAS2R7Q9NYW3 318 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 ASIC3Q9UHC3 531 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 IL17BQ9UHF5 180 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 ENPP5Q9UJA9 477 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 TRPC5Q9UL62 973 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 PCDHA12Q9UN75 941 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF510Q9Y2H8 683 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 ZBTB1Q9Y2K1 713 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 PUS1Q9Y606 427 aaKnown RBP eCLIP4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 ZHX2Q9Y6X8 837 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 NOTCH4Q99466 2003 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 MAPK8IP3Q9UPT6 1336 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 TRBV5-3A0A0A0MS03 114 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 LNP1A1A4G5 178 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 ASB14A6NK59 587 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 E7ENQ6 273 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 SNAP23O00161 211 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 PRYO14603 147 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 ZNF208O43345 1280 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CHMP2AO43633 222 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 IDH3BO43837 385 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 SLC28A2O43868 658 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CSO75390 466 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CABYRO75952 493 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 TOMM70O94826 608 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 GLCEO94923 617 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 KAT7O95251 611 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CAPN1P07384 714 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 STAG3L1P0CL83 205 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CYP4B1P13584 511 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 MMP9P14780 707 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CTRB1P17538 263 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 PSMA2P25787 234 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 HOXC9P31274 260 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 PCYT1AP49585 367 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CSNK1EP49674 416 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 DAOAP59103 153 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 YWHAGP61981 247 aaKnown RBP eCLIP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 SHC2P98077 582 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 LRRC63Q05C16 580 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 PIGHQ14442 188 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 SPCS2Q15005 226 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 PLEKHO1Q53GL0 409 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 PMS2CLQ68D20 193 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CTRB2Q6GPI1 263 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 PODNL1Q6PEZ8 512 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 GPRIN3Q6ZVF9 776 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CYP4V2Q6ZWL3 525 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 ARID3BQ8IVW6 561 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 ADHFE1Q8IWW8 467 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 FAM58AQ8N1B3 248 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 FAM47BQ8NA70 645 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 MINDY2Q8NBR6 621 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 OR4K14Q8NGD5 310 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 FAM110DQ8TAY7 271 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 FANK1Q8TC84 345 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 LRRC20Q8TCA0 184 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 DQX1Q8TE96 717 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 HEXDCQ8WVB3 486 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CAPSLQ8WWF8 208 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 GTF3C6Q969F1 213 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 ESAMQ96AP7 390 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 ARRDC3Q96B67 414 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 ERLEC1Q96DZ1 483 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 BSCL2Q96G97 398 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 LRRC3BQ96PB8 259 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CDRT15Q96T59 188 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CIB1Q99828 191 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 TMEM204Q9BSN7 226 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms