RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 DPH5Q9H2P9 285 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 COPS7BQ9H9Q2 264 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-206ENST00000466591 CLK4Q9HAZ1 481 aaKnown RBP16.46■□□□□ 0.23
COL7A1-206ENST00000466591 PRDM9Q9NQV7 894 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 LANCL2Q9NS86 450 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 LRFN1Q9P244 771 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 ANKDD1BA6NHY2 528 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 HNRNPRO43390 633 aaKnown RBP16.45■□□□□ 0.22
COL7A1-206ENST00000466591 SERPINA6P08185 405 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 MAOAP21397 527 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 CD96P40200 585 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 RPL21P46778 160 aaKnown RBP16.45■□□□□ 0.22
COL7A1-206ENST00000466591 BTN3A2P78410 334 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 CDKL1Q00532 357 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 SLC13A2Q13183 592 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 FASTKD3Q14CZ7 662 aaKnown RBP16.45■□□□□ 0.22
COL7A1-206ENST00000466591 ZNF324BQ6AW86 544 aaPredicted RBP16.45■□□□□ 0.22
COL7A1-206ENST00000466591 TMIGD1Q6UXZ0 262 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 QSOX2Q6ZRP7 698 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 MAATS1Q7Z4T9 603 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 CTAGE3PQ8IX95 158 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 SHISA5Q8N114 240 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 EXT2Q93063 718 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 MARVELD3Q96A59 401 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 SIGLEC12Q96PQ1 595 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 TSPAN10Q9H1Z9 355 aaPredicted RBP16.45■□□□□ 0.22
COL7A1-206ENST00000466591 SPNS1Q9H2V7 528 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 POPDC3Q9HBV1 291 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 SAYSD1Q9NPB0 183 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 MRPS33Q9Y291 106 aaKnown RBP16.45■□□□□ 0.22
COL7A1-206ENST00000466591 CPAMD8Q8IZJ3 1885 aa16.45■□□□□ 0.22
COL7A1-206ENST00000466591 ENO4A6NNW6 628 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 NPIPA5E9PKD4 350 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 CLDN4O14493 209 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 B3GALT2O43825 422 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 SLC19A2O60779 497 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 C1GALT1C1LP0DN25 315 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 ABOP16442 354 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 STMN1P16949 149 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 MST1P26927 711 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 CYB561P49447 251 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 POU4F1Q01851 419 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 TGM3Q08188 693 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 HYAL2Q12891 473 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 RCN2Q14257 317 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 SLBPQ14493 270 aaKnown RBP eCLIP16.44■□□□□ 0.22
COL7A1-206ENST00000466591 PPP1R3AQ16821 1122 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 ZXDCQ2QGD7 858 aaPredicted RBP16.44■□□□□ 0.22
COL7A1-206ENST00000466591 H3F3CQ6NXT2 135 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 TRIM40Q6P9F5 258 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 GALNTL5Q7Z4T8 443 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 GPSM1Q86YR5 675 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.44■□□□□ 0.22
COL7A1-206ENST00000466591 LGI4Q8N135 537 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 KIF2BQ8N4N8 673 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 ANKRD53Q8N9V6 530 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 RELTQ969Z4 430 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 GAL3ST3Q96A11 431 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 CCDC77Q9BR77 488 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 SLC6A16Q9GZN6 736 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 PLAC1Q9HBJ0 212 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 PNO1Q9NRX1 252 aaKnown RBP16.44■□□□□ 0.22
COL7A1-206ENST00000466591 CD274Q9NZQ7 290 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 IKZF3Q9UKT9 509 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 NPIPA1Q9UND3 350 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 PCDHGB6Q9Y5F9 930 aa16.44■□□□□ 0.22
COL7A1-206ENST00000466591 A0A0G2JN53 185 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 SAGE2PA6NJ88 616 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 ERI3O43414 337 aaKnown RBP16.43■□□□□ 0.22
COL7A1-206ENST00000466591 SLC25A12O75746 678 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 MYO1DO94832 1006 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 GSTM2P28161 218 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 GDF5P43026 501 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 CA7P43166 264 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 SMSP52788 366 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 BTG2P78543 158 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 MRPS25P82663 173 aaKnown RBP16.43■□□□□ 0.22
COL7A1-206ENST00000466591 HIST2H2ACQ16777 129 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-206ENST00000466591 KRTCAP3Q53RY4 240 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 HIST2H2AA3Q6FI13 130 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 SLC25A25Q6KCM7 469 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 RPTNQ6XPR3 784 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 RAPH1Q70E73 1250 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-206ENST00000466591 MRGPRGQ86SM5 289 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 WDR83Q9BRX9 315 aaKnown RBP16.43■□□□□ 0.22
COL7A1-206ENST00000466591 HES7Q9BYE0 225 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 DERL2Q9GZP9 239 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 KLHL31Q9H511 634 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 DNAJC11Q9NVH1 559 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 MOCS1Q9NZB8 636 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 FBXW2Q9UKT8 454 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 ENTPD4Q9Y227 616 aa16.43■□□□□ 0.22
COL7A1-206ENST00000466591 SVILO95425 2214 aa16.42■□□□□ 0.22
COL7A1-206ENST00000466591 TRBV11-1A0A0K0K1C0 115 aa16.42■□□□□ 0.22
COL7A1-206ENST00000466591 IFNA16P05015 189 aa16.42■□□□□ 0.22
COL7A1-206ENST00000466591 SP1P08047 785 aa16.42■□□□□ 0.22
COL7A1-206ENST00000466591 CCDC166P0CW27 439 aa16.42■□□□□ 0.22
COL7A1-206ENST00000466591 ZNF24P17028 368 aa16.42■□□□□ 0.22
COL7A1-206ENST00000466591 TPP2P29144 1249 aaPredicted RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms