RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ZIM3Q96PE6 472 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 SELENOSQ9BQE4 189 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 CD244Q9BZW8 370 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 DNAJC11Q9NVH1 559 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 IRAK4Q9NWZ3 460 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 GPRC5BQ9NZH0 403 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 TMEM216Q9P0N5 145 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 DHCR7Q9UBM7 475 aaKnown RBP11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 SUCOQ9UBS9 1254 aaKnown RBP11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 NDOR1Q9UHB4 597 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 DCDC2Q9UHG0 476 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 NCOA6Q14686 2063 aaPredicted RBP11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 HAT1O14929 419 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 CCNT2O60583 730 aaKnown RBP11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 SMIM24O75264 130 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 JRKO75564 520 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 ONECUT2O95948 504 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 CTSBP07858 339 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 SBK3P0C264 359 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 PIM1P11309 404 aaPredicted RBP11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 KRT4P19013 534 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 GNAZP19086 355 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 GCGRP47871 477 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 AGTR2P50052 363 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 CCR8P51685 355 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 RPS15AP62244 130 aaKnown RBP11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 CDC16Q13042 620 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 GRM7Q14831 915 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 PDK4Q16654 411 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 FAM214AQ32MH5 1076 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 KRT71Q3SY84 523 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 DCAF10Q5QP82 559 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 CATSPEREQ5SY80 951 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 FRMPD2BQ6IN97 320 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 MRPL14Q6P1L8 145 aaKnown RBP11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 LRIG3Q6UXM1 1119 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 TMPRSS11BQ86T26 416 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 TRABD2AQ86V40 505 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 OR4K1Q8NGD4 311 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 OR2Y1Q8NGV0 311 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 NANOS1Q8WY41 292 aaKnown RBP11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 NACC2Q96BF6 587 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 CCDC120Q96HB5 630 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 ZNF285Q96NJ3 590 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 OR2A5Q96R48 311 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 SLX1AQ9BQ83 275 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 WDR77Q9BQA1 342 aaPredicted RBP11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 CAPS2Q9BXY5 557 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 PELI2Q9HAT8 420 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 ASB1Q9Y576 335 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 CACNA1CQ13936 2221 aa11.29□□□□□ -0.6
SQSTM1-206ENST00000466342 MAP1AP78559 2803 aaPredicted RBP11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 LOC105369274A0A096LPK9 316 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 LOC102723532A0A0G2JNH3 316 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 A0A1B0GX78 115 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 TRBC2A0A5B9 178 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 FAM221AA4D161 298 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 H0YGG7 62 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 STX16-NPEPL1H3BU86 382 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 K7EPI3 171 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 COPEO14579 308 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 STX16O14662 325 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 CLGNO14967 610 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 DSCR3O14972 297 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 ALBP02768 609 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 DRD2P14416 443 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 EPORP19235 508 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 ALAS2P22557 587 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 CRHR1P34998 444 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 GRK3P35626 688 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 FOLR3P41439 243 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 CCT5P48643 541 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 VSX2P58304 361 aaPredicted RBP11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 ARF3P61204 181 aaPredicted RBP11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 REEP5Q00765 189 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 SLC18A2Q05940 514 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 PCBP2Q15366 365 aaKnown RBP eCLIP11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 CEP85LQ5SZL2 805 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 METTL2BQ6P1Q9 378 aaKnown RBP11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 XKRXQ6PP77 449 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 NXPE4Q6UWF7 544 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 TTLL10Q6ZVT0 673 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 OVCH1Q7RTY7 1134 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 CROCCP2Q86T23 111 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 PLD3Q8IV08 490 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 OR4N4Q8N0Y3 316 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 C4orf33Q8N1A6 199 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 PTGR2Q8N8N7 351 aaPredicted RBP11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 SNX31Q8N9S9 440 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 DNAJB14Q8TBM8 379 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 PPP4R1Q8TF05 950 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 RERGQ96A58 199 aaPredicted RBP11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 FKBP10Q96AY3 582 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 THAP11Q96EK4 314 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 SARGQ9BW04 601 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 SYNPO2LQ9H987 977 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 MKS1Q9NXB0 559 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 OPTCQ9UBM4 332 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 EMCNQ9ULC0 261 aa11.28□□□□□ -0.6
SQSTM1-206ENST00000466342 GRID1Q9ULK0 1009 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms