RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 PRAMEF4O60810 478 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 TSC22D2O75157 780 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 EPORP19235 508 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 ACVR2AP27037 513 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 HNF1BP35680 557 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 CYP4F8P98187 520 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 C10orf62Q5T681 223 aaPredicted RBP11.95□□□□□ -0.5
HDAC4-208ENST00000463007 C1orf53Q5VUE5 145 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 AGAP6Q5VW22 663 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 PRAMEF9Q5VWM5 478 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 PTCHD4Q6ZW05 846 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 DDX53Q86TM3 631 aaKnown RBP11.95□□□□□ -0.5
HDAC4-208ENST00000463007 GLCCI1Q86VQ1 547 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 TAGAPQ8N103 731 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 DNAJC22Q8N4W6 341 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 IL17RDQ8NFM7 739 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 KBTBD8Q8NFY9 601 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 ZNF566Q969W8 418 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 TOX2Q96NM4 488 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 AGAP4Q96P64 663 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 LYSMD1Q96S90 227 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 LINC00597Q9H2U6 94 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 PCDHB1Q9Y5F3 818 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 SAGE2PA6NJ88 616 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 CLDN24A6NM45 220 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 H3BN98 237 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 CPNE3O75131 537 aaKnown RBP11.95□□□□□ -0.5
HDAC4-208ENST00000463007 DNAJB5O75953 348 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 HLA-EP13747 358 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 MC1RQ01726 317 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 BAK1Q16611 211 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 DUOXA1Q1HG43 343 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 DGKKQ5KSL6 1271 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 PAMR1Q6UXH9 720 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 SLC39A5Q6ZMH5 540 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 GAREM2Q75VX8 874 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 CADM2Q8N3J6 435 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 CPXM2Q8N436 756 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 LILRB4Q8NHJ6 448 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 EFHD2Q96C19 240 aaPredicted RBP11.95□□□□□ -0.5
HDAC4-208ENST00000463007 SLC32A1Q9H598 525 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 ZNF556Q9HAH1 456 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 PSORS1C1Q9UIG5 152 aa11.95□□□□□ -0.5
HDAC4-208ENST00000463007 FKTNO75072 461 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 CCR7P32248 378 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 UGT2B15P54855 530 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 CAV3P56539 151 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 RPS26P62854 115 aaKnown RBP11.94□□□□□ -0.5
HDAC4-208ENST00000463007 MEF2AQ02078 507 aaPredicted RBP11.94□□□□□ -0.5
HDAC4-208ENST00000463007 ZC3H12BQ5HYM0 836 aaKnown RBP11.94□□□□□ -0.5
HDAC4-208ENST00000463007 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.94□□□□□ -0.5
HDAC4-208ENST00000463007 MPP7Q5T2T1 576 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 PNCKQ6P2M8 343 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 PAQR6Q6TCH4 344 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 CERS6Q6ZMG9 384 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 ZNF517Q6ZMY9 492 aaPredicted RBP11.94□□□□□ -0.5
HDAC4-208ENST00000463007 HTR3DQ70Z44 454 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 EIF3MQ7L2H7 374 aaKnown RBP11.94□□□□□ -0.5
HDAC4-208ENST00000463007 SLC46A3Q7Z3Q1 461 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 TRIM46Q7Z4K8 759 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 DEFB128Q7Z7B8 93 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 GALNT13Q8IUC8 556 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 BBS7Q8IWZ6 715 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 C1orf52Q8N6N3 182 aaKnown RBP11.94□□□□□ -0.5
HDAC4-208ENST00000463007 ARL14EPQ8N8R7 260 aaPredicted RBP11.94□□□□□ -0.5
HDAC4-208ENST00000463007 GPR26Q8NDV2 337 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 PHOX2BQ99453 314 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 P2RY13Q9BPV8 354 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 SLC30A2Q9BRI3 323 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 ABCB8Q9NUT2 735 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 PLXNA2O75051 1894 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 GRXCR2A6NFK2 248 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 MGAT4DA6NG13 374 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 HOXC11O43248 304 aaPredicted RBP11.94□□□□□ -0.5
HDAC4-208ENST00000463007 CDK1P06493 297 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 SLC7A9P82251 487 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 CSTF3Q12996 717 aaKnown RBP11.94□□□□□ -0.5
HDAC4-208ENST00000463007 GAB1Q13480 694 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 ATP13A5Q4VNC0 1218 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 FRG2Q64ET8 278 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 TXNDC8Q6A555 127 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 FAM124AQ86V42 546 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 NFKBIDQ8NI38 313 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 FRG2BQ96QU4 278 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 GFM1Q96RP9 751 aaKnown RBP11.94□□□□□ -0.5
HDAC4-208ENST00000463007 DUSP26Q9BV47 211 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 TOR4AQ9NXH8 423 aa11.94□□□□□ -0.5
HDAC4-208ENST00000463007 ARID1BQ8NFD5 2236 aaPredicted RBP11.94□□□□□ -0.5
HDAC4-208ENST00000463007 SOCS5O75159 536 aa11.93□□□□□ -0.5
HDAC4-208ENST00000463007 SDHBP21912 280 aa11.93□□□□□ -0.5
HDAC4-208ENST00000463007 STK19P49842 368 aaPredicted RBP11.93□□□□□ -0.5
HDAC4-208ENST00000463007 TUBA1BP68363 451 aa11.93□□□□□ -0.5
HDAC4-208ENST00000463007 BCL2L1Q07817 233 aa11.93□□□□□ -0.5
HDAC4-208ENST00000463007 GPRC6AQ5T6X5 926 aa11.93□□□□□ -0.5
HDAC4-208ENST00000463007 PPP2R2DQ66LE6 453 aa11.93□□□□□ -0.5
HDAC4-208ENST00000463007 KIAA1841Q6NSI8 718 aa11.93□□□□□ -0.5
HDAC4-208ENST00000463007 LYPD8Q6UX82 237 aa11.93□□□□□ -0.5
HDAC4-208ENST00000463007 TUBA1AQ71U36 451 aa11.93□□□□□ -0.5
HDAC4-208ENST00000463007 TMCO2Q7Z6W1 182 aaPredicted RBP11.93□□□□□ -0.5
HDAC4-208ENST00000463007 ABI3BPQ7Z7G0 1075 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms