RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 CDKL4Q5MAI5 379 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 AGAP7PQ5VUJ5 663 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 GARNL3Q5VVW2 1013 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 OR11G2Q8NGC1 345 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 OR6Y1Q8NGX8 325 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 ZNF75CPQ92670 426 aaPredicted RBP17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 MVB12AQ96EY5 273 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 CCDC138Q96M89 665 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 PRAP1Q96NZ9 151 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 AGAP4Q96P64 663 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 OR2A5Q96R48 311 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 LHPPQ9H008 270 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 CUEDC1Q9NWM3 386 aaPredicted RBP17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 TRPC4Q9UBN4 977 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 PABPN1LA6NDY0 278 aaKnown RBP17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 TMEM114B3SHH9 223 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 S100BP04271 92 aaPredicted RBP17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 GFAPP14136 432 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 ACPPP15309 386 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 HRH2P25021 359 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 CXCR2P25025 360 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 SERPINB5P36952 375 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 KCNC1P48547 511 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 AP1S2P56377 157 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 NAA20P61599 178 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 DSG2Q14126 1118 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 NDUFA9Q16795 377 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 PLD3Q8IV08 490 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 LRRC56Q8IYG6 542 aaPredicted RBP17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 CISD2Q8N5K1 135 aaKnown RBP17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 PTGR2Q8N8N7 351 aaPredicted RBP17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 SNRNP40Q96DI7 357 aaKnown RBP17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 L3HYPDHQ96EM0 354 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 CHMP6Q96FZ7 201 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 THOC3Q96J01 351 aaKnown RBP17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 ZNF317Q96PQ6 595 aaPredicted RBP17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 TRIM54Q9BYV2 358 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 DRC3Q9H069 523 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 EPS8L2Q9H6S3 715 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 PARVBQ9HBI1 364 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 ZBTB20Q9HC78 741 aaPredicted RBP17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 ADAMTS6Q9UKP5 1117 aa17.08■□□□□ 0.32
SQSTM1-204ENST00000453046 TCP11X1B4DZS4 312 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 FFAR3O14843 346 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 GPR42O15529 346 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 HIST1H2AGP0C0S8 130 aaPredicted RBP17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 HIST1H2ADP20671 130 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 EMP2P54851 167 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 ALDH18A1P54886 795 aaKnown RBP17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 TBPL1P62380 186 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 HERVK_113P63132 956 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 RELAQ04206 551 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 BST1Q10588 318 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 PHKG1Q16816 387 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 TCAIMQ8N3R3 496 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 UBTD2Q8WUN7 234 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 C8orf44Q96CB5 159 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 C19orf60Q96EN9 201 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 HIST1H2AHQ96KK5 128 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 TMEM237Q96Q45 408 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 HIST1H2AJQ99878 128 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 WDR77Q9BQA1 342 aaPredicted RBP17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 H2AFJQ9BTM1 129 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 C1QTNF3Q9BXJ4 246 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 ERVK-6Q9BXR3 956 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 NSRP1Q9H0G5 558 aaKnown RBP17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 PCBD2Q9H0N5 130 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 SYNPO2LQ9H987 977 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 ZNF160Q9HCG1 818 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 TMEM184CQ9NVA4 438 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 C14orf105Q9NVL8 296 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 CD274Q9NZQ7 290 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 PDE10AQ9Y233 779 aa17.07■□□□□ 0.32
SQSTM1-204ENST00000453046 IGLV3-12A0A075B6K2 115 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 A0A0A6YYC8 382 aaPredicted RBP17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 NSG1A0A0A6YYJ2 146 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 BLACEA4D250 179 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 IDSB3KWA1 339 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 I3L1I5 382 aaPredicted RBP17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 NPHS1O60500 1241 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 SNNO75324 88 aaPredicted RBP17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 SNUPNO95149 360 aaKnown RBP17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 HPP00738 406 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 HEXBP07686 556 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 AVPR1BP47901 424 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 STX3Q13277 289 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 SETDB1Q15047 1291 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 PFKFB4Q16877 469 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 EIF2S3LQ2VIR3 472 aaKnown RBP17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 AGTRAPQ6RW13 159 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 Q6ZS92 163 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 ZCCHC23Q6ZST2 131 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 LAPTM4BQ86VI4 370 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 DNAJB14Q8TBM8 379 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 C7orf26Q96N11 449 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 GATA5Q9BWX5 397 aaPredicted RBP17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 ATG10Q9H0Y0 220 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 MKKSQ9NPJ1 570 aaPredicted RBP17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 ASF1BQ9NVP2 202 aa17.06■□□□□ 0.32
SQSTM1-204ENST00000453046 COPG1Q9Y678 874 aaKnown RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms