RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CDKN2DP55273 166 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 RAB8AP61006 207 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 STXBP1P61764 594 aaKnown RBP12.44□□□□□ -0.42
HMGB3-204ENST00000448905 OLR1P78380 273 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 BTG2P78543 158 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 PPP1R7Q15435 360 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 PHKG1Q16816 387 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 KCTD19Q17RG1 926 aaPredicted RBP12.44□□□□□ -0.42
HMGB3-204ENST00000448905 CATSPEREQ5SY80 951 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 ZNF468Q5VIY5 522 aaPredicted RBP12.44□□□□□ -0.42
HMGB3-204ENST00000448905 C3P1Q6ZMU1 363 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 MEX3BQ6ZN04 569 aaKnown RBP12.44□□□□□ -0.42
HMGB3-204ENST00000448905 GAS2L3Q86XJ1 694 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 SULF2Q8IWU5 870 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 SHISA5Q8N114 240 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 RASGEF1CQ8N431 466 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 KIF2BQ8N4N8 673 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 FAM57AQ8TBR7 257 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 UTP15Q8TED0 518 aaKnown RBP12.44□□□□□ -0.42
HMGB3-204ENST00000448905 ENKD1Q9H0I2 346 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 SLC24A3Q9HC58 644 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 TIMMDC1Q9NPL8 285 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 ZFATQ9P243 1243 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 FBXW2Q9UKT8 454 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 CORO1CQ9ULV4 474 aaPredicted RBP12.44□□□□□ -0.42
HMGB3-204ENST00000448905 SH2B3Q9UQQ2 575 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 ASB1Q9Y576 335 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 PDZD2O15018 2839 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 A0A088AWK7 358 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 A0A1B0GTH9 108 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 TCRBV16S1A1N1A0A5B0 115 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 A8MUA0 341 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 C19orf84I3L1E1 186 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 CDC40O60508 579 aaKnown RBP eCLIP12.43□□□□□ -0.42
HMGB3-204ENST00000448905 SERPINA6P08185 405 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 MAOAP21397 527 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 ZNF10P21506 573 aaPredicted RBP12.43□□□□□ -0.42
HMGB3-204ENST00000448905 MEOX1P50221 254 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 HSF1Q00613 529 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 TIAL1Q01085 375 aaKnown RBP eCLIP12.43□□□□□ -0.42
HMGB3-204ENST00000448905 CRYMQ14894 314 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 CYP1B1Q16678 543 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 BBS9Q3SYG4 887 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 HECTD2Q5U5R9 776 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 ARHGAP11AQ6P4F7 1023 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 CEP128Q6ZU80 1094 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 THOC6Q86W42 341 aaKnown RBP12.43□□□□□ -0.42
HMGB3-204ENST00000448905 ARMC10Q8N2F6 343 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 B3GNT7Q8NFL0 401 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 C16orf52Q8NHV5 167 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 RND1Q92730 232 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 NEIL2Q969S2 332 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 PDLIM5Q96HC4 596 aaKnown RBP12.43□□□□□ -0.42
HMGB3-204ENST00000448905 DMRTA2Q96SC8 542 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 PELI2Q9HAT8 420 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 KCNJ16Q9NPI9 418 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 ERVK-11Q9UQG0 969 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 YARS2Q9Y2Z4 477 aaKnown RBP12.43□□□□□ -0.42
HMGB3-204ENST00000448905 NEU2Q9Y3R4 380 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 MMACHCQ9Y4U1 282 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 APCP25054 2843 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 FBN2P35556 2912 aa12.43□□□□□ -0.42
HMGB3-204ENST00000448905 PGRMC1O00264 195 aaKnown RBP12.42□□□□□ -0.42
HMGB3-204ENST00000448905 ADAM10O14672 748 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 DNAJB6O75190 326 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 ZFAND5O76080 213 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 GABRB3P28472 473 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 CHRNB4P30926 498 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 PTGER1P34995 402 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 FNTAP49354 379 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 HNMTP50135 292 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 BTN3A2P78410 334 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 RCN2Q14257 317 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 CDSNQ15517 529 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 TERF2Q15554 542 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 RNFT1Q5M7Z0 435 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 FAM45BPQ6NSW5 357 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 NXPE4Q6UWF7 544 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 RGS9BPQ6ZS82 235 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 ACAD11Q709F0 780 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 GALNT7Q86SF2 657 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 CDH24Q86UP0 819 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 SPNS2Q8IVW8 549 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 GPALPP1Q8IXQ4 340 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 CYP4Z2PQ8N1L4 340 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 NKAPQ8N5F7 415 aaKnown RBP12.42□□□□□ -0.42
HMGB3-204ENST00000448905 NFAM1Q8NET5 270 aaPredicted RBP12.42□□□□□ -0.42
HMGB3-204ENST00000448905 TTLQ8NG68 377 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 LILRB4Q8NHJ6 448 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 FAM45AQ8TCE6 357 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 ANKRD7Q92527 254 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 MS4A14Q96JA4 679 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 TSNARE1Q96NA8 513 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 OR4K3Q96R72 315 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 NPLQ9BXD5 320 aaPredicted RBP12.42□□□□□ -0.42
HMGB3-204ENST00000448905 CAPS2Q9BXY5 557 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 SLC6A16Q9GZN6 736 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 TP63Q9H3D4 680 aaPredicted RBP12.42□□□□□ -0.42
HMGB3-204ENST00000448905 PNO1Q9NRX1 252 aaKnown RBP12.42□□□□□ -0.42
HMGB3-204ENST00000448905 MRPS33Q9Y291 106 aaKnown RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms