RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 XKR7Q5GH72 579 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 OR4C11Q6IEV9 310 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 PRMT9Q6P2P2 845 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 ABHD17CQ6PCB6 329 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 Q6ZSR9 355 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 UBE3DQ7Z6J8 389 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 LRRC34Q8IZ02 419 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 METTL4Q8N3J2 472 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 C19orf60Q96EN9 201 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 MVB12AQ96EY5 273 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 LRFN5Q96NI6 719 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 KCNC2Q96PR1 638 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 C17orf62Q9BQA9 187 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 NUF2Q9BZD4 464 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 COPS7BQ9H9Q2 264 aaPredicted RBP14.99□□□□□ -0.01
USP40-206ENST00000443711 FGFR1OP2Q9NVK5 253 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 DHCR7Q9UBM7 475 aaKnown RBP14.99□□□□□ -0.01
USP40-206ENST00000443711 WASF3Q9UPY6 502 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 CCL27Q9Y4X3 112 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 PCDHGA7Q9Y5G6 932 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 PTGDR2Q9Y5Y4 395 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 AK5Q9Y6K8 562 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 USH1CQ9Y6N9 552 aa14.99□□□□□ -0.01
USP40-206ENST00000443711 A0A0A6YYC8 382 aaPredicted RBP14.98□□□□□ -0.01
USP40-206ENST00000443711 TRABD2BA6NFA1 517 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 NPIPB8E9PQR5 432 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 I3L1I5 382 aaPredicted RBP14.98□□□□□ -0.01
USP40-206ENST00000443711 PLPP1O14494 284 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 FOXS1O43638 330 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 GALR3O60755 368 aaPredicted RBP14.98□□□□□ -0.01
USP40-206ENST00000443711 VPS4BO75351 444 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 DXOO77932 396 aaKnown RBP14.98□□□□□ -0.01
USP40-206ENST00000443711 STK17BO94768 372 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 KLHL18O94889 574 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 MED26O95402 600 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 TGDSO95455 350 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 NSA2O95478 260 aaKnown RBP14.98□□□□□ -0.01
USP40-206ENST00000443711 KLK3P07288 261 aaPredicted RBP14.98□□□□□ -0.01
USP40-206ENST00000443711 ZNF28P17035 718 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 IL1RNP18510 177 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 PRPH2P23942 346 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 SLC5A2P31639 672 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 LSP1P33241 339 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 TSFMP43897 325 aaKnown RBP14.98□□□□□ -0.01
USP40-206ENST00000443711 ACSM2AQ08AH3 577 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 TBL3Q12788 808 aaKnown RBP14.98□□□□□ -0.01
USP40-206ENST00000443711 NR6A1Q15406 480 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 DEFB134Q4QY38 66 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 SPIN4Q56A73 249 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 ACSM2BQ68CK6 577 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 PAGE2Q7Z2X7 111 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 MTERF4Q7Z6M4 381 aaKnown RBP14.98□□□□□ -0.01
USP40-206ENST00000443711 OR2T11Q8NH01 316 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 PROKR1Q8TCW9 393 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 CHTF18Q8WVB6 975 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 TUBGCP3Q96CW5 907 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 NXPE2Q96DL1 559 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 CHMP6Q96FZ7 201 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 METTL2AQ96IZ6 378 aaKnown RBP14.98□□□□□ -0.01
USP40-206ENST00000443711 PPP3R2Q96LZ3 170 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 C3orf30Q96M34 536 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 QRFPRQ96P65 431 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 ZNF317Q96PQ6 595 aaPredicted RBP14.98□□□□□ -0.01
USP40-206ENST00000443711 MRPL1Q9BYD6 325 aaKnown RBP14.98□□□□□ -0.01
USP40-206ENST00000443711 MEAF6Q9HAF1 191 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 CLK4Q9HAZ1 481 aaKnown RBP14.98□□□□□ -0.01
USP40-206ENST00000443711 PRDM7Q9NQW5 492 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 C1orf109Q9NX04 203 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 MSRB2Q9Y3D2 182 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 NAALAD2Q9Y3Q0 740 aa14.98□□□□□ -0.01
USP40-206ENST00000443711 TMEM184BQ9Y519 407 aaPredicted RBP14.98□□□□□ -0.01
USP40-206ENST00000443711 A0A0G2JN53 185 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 CDRT15L2A8MXV6 281 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 C4orf51C9J302 202 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 H0YIG0 161 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 SEC22BO75396 215 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 JUNP05412 331 aaKnown RBP14.97□□□□□ -0.01
USP40-206ENST00000443711 ADRB1P08588 477 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 TROVE2P10155 538 aaKnown RBP eCLIP14.97□□□□□ -0.01
USP40-206ENST00000443711 PIM1P11309 404 aaPredicted RBP14.97□□□□□ -0.01
USP40-206ENST00000443711 ALOX15P16050 662 aaPredicted RBP14.97□□□□□ -0.01
USP40-206ENST00000443711 SPINK2P20155 84 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 ATP5A1P25705 553 aaKnown RBP14.97□□□□□ -0.01
USP40-206ENST00000443711 CD82P27701 267 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 BSGP35613 385 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 SSR2P43308 183 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 MTTPP55157 894 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 SNRPNP63162 240 aaKnown RBP14.97□□□□□ -0.01
USP40-206ENST00000443711 ABHD18Q0P651 414 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 C1orf189Q5VU69 101 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 C1orf52Q8N6N3 182 aaKnown RBP14.97□□□□□ -0.01
USP40-206ENST00000443711 SLC38A9Q8NBW4 561 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 OR9A4Q8NGU2 314 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 RNF31Q96EP0 1072 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 MMABQ96EY8 250 aaPredicted RBP14.97□□□□□ -0.01
USP40-206ENST00000443711 PPP1R36Q96LQ0 422 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 SERINC2Q96SA4 455 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 DPH2Q9BQC3 489 aaPredicted RBP14.97□□□□□ -0.01
USP40-206ENST00000443711 SIKE1Q9BRV8 207 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 TRIM55Q9BYV6 548 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms