RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 RBP1P09455 135 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 SMIM10L1P0DMW3 83 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 ICAM2P13598 275 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 MTHFD2P13995 350 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 EPB42P16452 691 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 EPORP19235 508 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 ZNF10P21506 573 aaPredicted RBP14.33□□□□□ -0.12
LIMS3-201ENST00000437679 MAGEA12P43365 314 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 EFNA3P52797 238 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 ALDH18A1P54886 795 aaKnown RBP14.33□□□□□ -0.12
LIMS3-201ENST00000437679 MLLT10P55197 1068 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 SETDB1Q15047 1291 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 PCOLCEQ15113 449 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 TSNAXIP1Q2TAA8 658 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 PRAMEF9Q5VWM5 478 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 SLC6A19Q695T7 634 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 CPEB2Q7Z5Q1 589 aaKnown RBP14.33□□□□□ -0.12
LIMS3-201ENST00000437679 SHISA5Q8N114 240 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 PLD6Q8N2A8 252 aaKnown RBP14.33□□□□□ -0.12
LIMS3-201ENST00000437679 TEX9Q8N6V9 391 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 LRRN4CLQ8ND94 238 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 PLPP5Q8NEB5 264 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 SMIM10Q96HG1 83 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 SCYL1Q96KG9 808 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 GPR78Q96P69 363 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 TUBB6Q9BUF5 446 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 EPS8L2Q9H6S3 715 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 L2HGDHQ9H9P8 463 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 CPSF2Q9P2I0 782 aaKnown RBP14.33□□□□□ -0.12
LIMS3-201ENST00000437679 ZNF490Q9ULM2 529 aaPredicted RBP14.33□□□□□ -0.12
LIMS3-201ENST00000437679 OR2W5A6NFC9 320 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 ERI3O43414 337 aaKnown RBP14.32□□□□□ -0.12
LIMS3-201ENST00000437679 B4GALT2O60909 372 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 WFS1O76024 890 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 FAM153BP0C7A2 387 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 PRR35P0CG20 571 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 COL6A2P12110 1019 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 RNH1P13489 461 aaKnown RBP14.32□□□□□ -0.12
LIMS3-201ENST00000437679 HNRNPH1P31943 449 aaKnown RBP14.32□□□□□ -0.12
LIMS3-201ENST00000437679 CASP2P42575 452 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 BTN3A2P78410 334 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 FOXK1P85037 733 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 TGM3Q08188 693 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 NAA30Q147X3 362 aaPredicted RBP14.32□□□□□ -0.12
LIMS3-201ENST00000437679 ABRAXAS2Q15018 415 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 NSDHLQ15738 373 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 FAM153CQ494X1 144 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 TECRLQ5HYJ1 363 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 TEX35Q5T0J7 233 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 MED27Q6P2C8 311 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 TRIM40Q6P9F5 258 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 ISLR2Q6UXK2 745 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 RIPOR1Q6ZS17 1223 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 LANCL3Q6ZV70 420 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 ANKRD37Q7Z713 158 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 EFCAB3Q8N7B9 438 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 MS4A6EQ96DS6 147 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 REXO4Q9GZR2 422 aaKnown RBP14.32□□□□□ -0.12
LIMS3-201ENST00000437679 RHBGQ9H310 441 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 ZBTB20Q9HC78 741 aaPredicted RBP14.32□□□□□ -0.12
LIMS3-201ENST00000437679 LANCL2Q9NS86 450 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 LUZP4Q9P127 313 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 TMCO1Q9UM00 188 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 B3GNT3Q9Y2A9 372 aa14.32□□□□□ -0.12
LIMS3-201ENST00000437679 TNPO3Q9Y5L0 923 aaKnown RBP14.32□□□□□ -0.12
LIMS3-201ENST00000437679 IGHV3-20A0A0C4DH32 117 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 A0A0G2JN53 185 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 MAGEB17A8MXT2 336 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 B3GALT2O43825 422 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 KLK8O60259 260 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 DNAJB6O75190 326 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 SEC24DO94855 1032 aaPredicted RBP14.31□□□□□ -0.12
LIMS3-201ENST00000437679 SORBS2O94875 1100 aaKnown RBP14.31□□□□□ -0.12
LIMS3-201ENST00000437679 CD22P20273 847 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 PIK3CGP48736 1102 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 CD97P48960 835 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 RHAGQ02094 409 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 ACTN3Q08043 901 aaPredicted RBP14.31□□□□□ -0.12
LIMS3-201ENST00000437679 PCDH1Q08174 1060 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 E2F2Q14209 437 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 PCBP2Q15366 365 aaKnown RBP eCLIP14.31□□□□□ -0.12
LIMS3-201ENST00000437679 IGFBP7Q16270 282 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 CRB2Q5IJ48 1285 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 IGFL2Q6UWQ7 119 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 LINC00696Q6ZRV3 163 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 VN1R5Q7Z5H4 357 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 EIF1ADQ8N9N8 165 aaKnown RBP14.31□□□□□ -0.12
LIMS3-201ENST00000437679 OR2L5Q8NG80 312 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 CPT1CQ8TCG5 803 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 BRIX1Q8TDN6 353 aaKnown RBP14.31□□□□□ -0.12
LIMS3-201ENST00000437679 MTBPQ96DY7 904 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 IMMP1LQ96LU5 166 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 LMF1Q96S06 567 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 WDR77Q9BQA1 342 aaPredicted RBP14.31□□□□□ -0.12
LIMS3-201ENST00000437679 NPLQ9BXD5 320 aaPredicted RBP14.31□□□□□ -0.12
LIMS3-201ENST00000437679 AICDAQ9GZX7 198 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 ILKAPQ9H0C8 392 aaPredicted RBP14.31□□□□□ -0.12
LIMS3-201ENST00000437679 CLMPQ9H6B4 373 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 ZNF358Q9NW07 568 aa14.31□□□□□ -0.12
LIMS3-201ENST00000437679 PTGFRNQ9P2B2 879 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms